RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CD96P40200 585 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 SLC1A6P48664 564 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 RNF4P78317 190 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 OC90Q02509 493 aaPredicted RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 STX3Q13277 289 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 TUBA3CQ13748 450 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 ZNF267Q14586 743 aaPredicted RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 KIAA0040Q15053 153 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 NR6A1Q15406 480 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 INPP5JQ15735 1006 aaPredicted RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 TUBA3EQ6PEY2 450 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 DGAT2L6Q6ZPD8 337 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 SAMD14Q8IZD0 417 aaPredicted RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 GOLGA6L1Q8N7Z2 621 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 AGR3Q8TD06 166 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 THAP3Q8WTV1 239 aaPredicted RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 EBPLQ9BY08 206 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 TUBB1Q9H4B7 451 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 UTS2RQ9UKP6 389 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 YARS2Q9Y2Z4 477 aaKnown RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 TMED5Q9Y3A6 229 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 POLR3HQ9Y535 204 aaPredicted RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 PCDHGA10Q9Y5H3 936 aa13.98□□□□□ -0.17
UPF1-202ENST00000594243 COPG1Q9Y678 874 aaKnown RBP13.98□□□□□ -0.17
UPF1-202ENST00000594243 TMEM233B4DJY2 109 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 PIP5K1BO14986 540 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 ITM2AO43736 263 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 MAN1A2O60476 641 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 PRAMEF2O60811 474 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 ITGA10O75578 1167 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 IGKV3-11P04433 115 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 NT5EP21589 574 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 BGNP21810 368 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 ARRB2P32121 409 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 TRHRP34981 398 aaPredicted RBP13.97□□□□□ -0.17
UPF1-202ENST00000594243 CYB561P49447 251 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 ERVK-8P63133 956 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 C2orf80Q0P641 193 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 GALNT12Q8IXK2 581 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 ZNF321PQ8N8H1 164 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 KLHL29Q96CT2 875 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 PPP3R2Q96LZ3 170 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 CNPPD1Q9BV87 410 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 CXorf21Q9HAI6 301 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 GIMAP4Q9NUV9 329 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 ANKRD10Q9NXR5 420 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 EHD3Q9NZN3 535 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 LRFN1Q9P244 771 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 MAP10Q9P2G4 905 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 MYOTQ9UBF9 498 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 HEY2Q9UBP5 337 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 ERVK-19Q9WJR5 959 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 RAP2CQ9Y3L5 183 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 PCDHGB6Q9Y5F9 930 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 PTGDR2Q9Y5Y4 395 aa13.97□□□□□ -0.17
UPF1-202ENST00000594243 ASH1LQ9NR48 2969 aaKnown RBP13.97□□□□□ -0.17
UPF1-202ENST00000594243 OR6C76A6NM76 312 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 LSM1O15116 133 aaKnown RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 PRKNO60260 465 aaPredicted RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 LYPLA1O75608 230 aaPredicted RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 ATP1B1P05026 303 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 CD46P15529 392 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 DDCP20711 480 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 FEN1P39748 380 aaKnown RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 HLCSP50747 726 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 RPL14P50914 215 aaKnown RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 SSR4P51571 173 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 WDR4P57081 412 aaKnown RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 OR1C1Q15619 314 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 INAQ16352 499 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 GALNTL6Q49A17 601 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 RFTN2Q52LD8 501 aaPredicted RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 SPINK14Q6IE38 97 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 RNF111Q6ZNA4 994 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 IKBIPQ70UQ0 350 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 SLC29A4Q7RTT9 530 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 TRIM42Q8IWZ5 723 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 MMP21Q8N119 569 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 LRRC25Q8N386 305 aaPredicted RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 CISD2Q8N5K1 135 aaKnown RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 TMEM156Q8N614 296 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 OR2T11Q8NH01 316 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 NUBPLQ8TB37 319 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.96□□□□□ -0.17
UPF1-202ENST00000594243 MGARPQ8TDB4 240 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 SNRNP40Q96DI7 357 aaKnown RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 ATP6V1G3Q96LB4 118 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 TRIM4Q9C037 500 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 TRIM45Q9H8W5 580 aaPredicted RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 MYNNQ9NPC7 610 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 MIEF1Q9NQG6 463 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 AGPAT4Q9NRZ5 378 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 RYDENQ9NUL5 291 aaKnown RBP13.96□□□□□ -0.17
UPF1-202ENST00000594243 ENTPD4Q9Y227 616 aa13.96□□□□□ -0.17
UPF1-202ENST00000594243 DOCK10Q96BY6 2186 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 A0A1W2PS29 197 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 TMEM200CA6NKL6 621 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 HRKO00198 91 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 VPS4BO75351 444 aa13.95□□□□□ -0.18
UPF1-202ENST00000594243 OR2J2O76002 312 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms