RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 INAQ16352 499 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 SPINK14Q6IE38 97 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 OR2T11Q8NH01 316 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 SUN3Q8TAQ9 357 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.95■□□□□ 0.46
SS18-208ENST00000577751 TLCD1Q96CP7 247 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 SCMH1Q96GD3 660 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 ZNF681Q96N22 645 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 KCNK9Q9NPC2 374 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 LRFN1Q9P244 771 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 ZDHHC2Q9UIJ5 367 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 PSME2Q9UL46 239 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 YARS2Q9Y2Z4 477 aaKnown RBP17.95■□□□□ 0.46
SS18-208ENST00000577751 FIS1Q9Y3D6 152 aa17.95■□□□□ 0.46
SS18-208ENST00000577751 CROCCQ5TZA2 2017 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 GOLGA6L10A6NI86 522 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 TMEM233B4DJY2 109 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 ITGA10O75578 1167 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 CHEK2O96017 543 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 HLCSP50747 726 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 HK2P52789 917 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 SLC18A1P54219 525 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 ERVK-8P63133 956 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 OC90Q02509 493 aaPredicted RBP17.94■□□□□ 0.46
SS18-208ENST00000577751 ZNF763Q0D2J5 394 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 ZNF267Q14586 743 aaPredicted RBP17.94■□□□□ 0.46
SS18-208ENST00000577751 HEPACAMQ14CZ8 416 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 ZNF750Q32MQ0 723 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 ZNF766Q5HY98 468 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 SH2D4BQ5SQS7 431 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 GALNT11Q8NCW6 608 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 OR5L2Q8NGL0 311 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 NUBPLQ8TB37 319 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 TWIST2Q8WVJ9 160 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 CNRIP1Q96F85 164 aaPredicted RBP17.94■□□□□ 0.46
SS18-208ENST00000577751 FCRL1Q96LA6 429 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 EBPLQ9BY08 206 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 LIN28AQ9H9Z2 209 aaKnown RBP17.94■□□□□ 0.46
SS18-208ENST00000577751 ERVK-19Q9WJR5 959 aa17.94■□□□□ 0.46
SS18-208ENST00000577751 WBP11Q9Y2W2 641 aaKnown RBP17.94■□□□□ 0.46
SS18-208ENST00000577751 WDR91A4D1P6 747 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 ERAL1O75616 437 aaKnown RBP17.93■□□□□ 0.46
SS18-208ENST00000577751 CLPSP04118 112 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 ATP1B1P05026 303 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 SERPINE1P05121 402 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 CT62P0C5K7 136 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 LINC00032P0C843 101 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 NEFHP12036 1026 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 CSNK2A2P19784 350 aaPredicted RBP17.93■□□□□ 0.46
SS18-208ENST00000577751 ALDH9A1P49189 494 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 CYB561P49447 251 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 SLC37A1P57057 533 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 FUT7Q11130 342 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 CHI3L2Q15782 390 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 NOXRED1Q6NXP6 359 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 C16orf47Q6ZP98 133 aaPredicted RBP17.93■□□□□ 0.46
SS18-208ENST00000577751 C9orf40Q8IXQ3 194 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 HORMAD2Q8N7B1 307 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 GRHL3Q8TE85 626 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 DOK4Q8TEW6 326 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 KLHL29Q96CT2 875 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 TAAR6Q96RI8 345 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 CNPPD1Q9BV87 410 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 LRTM1Q9HBL6 345 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 C1orf109Q9NX04 203 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 EHD3Q9NZN3 535 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 UTS2RQ9UKP6 389 aa17.93■□□□□ 0.46
SS18-208ENST00000577751 POLR3HQ9Y535 204 aaPredicted RBP17.93■□□□□ 0.46
SS18-208ENST00000577751 GCN1Q92616 2671 aaKnown RBP17.93■□□□□ 0.46
SS18-208ENST00000577751 TMEM120BA0PK00 339 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 PIP5K1BO14986 540 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 LSM1O15116 133 aaKnown RBP17.92■□□□□ 0.46
SS18-208ENST00000577751 ITM2AO43736 263 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 SEC22BO75396 215 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 OR2J2O76002 312 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 SP1P08047 785 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 CD46P15529 392 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 H2AFXP16104 143 aaPredicted RBP17.92■□□□□ 0.46
SS18-208ENST00000577751 SOX18P35713 384 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 FEN1P39748 380 aaKnown RBP17.92■□□□□ 0.46
SS18-208ENST00000577751 WDR4P57081 412 aaKnown RBP17.92■□□□□ 0.46
SS18-208ENST00000577751 MAGOHP61326 146 aaKnown RBP17.92■□□□□ 0.46
SS18-208ENST00000577751 DUSP2Q05923 314 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 MGAT2Q10469 447 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 MAP4K2Q12851 820 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 CEBPEQ15744 281 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 MPEG1Q2M385 716 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 PRICKLE4Q2TBC4 344 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 FAM71E1Q6IPT2 247 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 ATCAYQ86WG3 371 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 GALNT12Q8IXK2 581 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 PPP1R14CQ8TAE6 165 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 AGR3Q8TD06 166 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 RASL10BQ96S79 203 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 C20orf27Q9GZN8 174 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 ZNF395Q9H8N7 513 aaPredicted RBP17.92■□□□□ 0.46
SS18-208ENST00000577751 MYNNQ9NPC7 610 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 AGPAT4Q9NRZ5 378 aa17.92■□□□□ 0.46
SS18-208ENST00000577751 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.92■□□□□ 0.46
SS18-208ENST00000577751 EXO1Q9UQ84 846 aaKnown RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms