RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TMEM156Q8N614 296 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 ANKRD42Q8N9B4 389 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 THAP3Q8WTV1 239 aaPredicted RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 TMEM125Q96AQ2 219 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 TM4SF18Q96CE8 201 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 PAIP2Q9BPZ3 127 aaKnown RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 LRTM1Q9HBL6 345 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 MYNNQ9NPC7 610 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 PLA2G3Q9NZ20 509 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 EHD3Q9NZN3 535 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 ZNF223Q9UK11 482 aaPredicted RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 UTS2RQ9UKP6 389 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 ERVK-19Q9WJR5 959 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 DLGAP4Q9Y2H0 992 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 YARS2Q9Y2Z4 477 aaKnown RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 TMED5Q9Y3A6 229 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 TRAF6Q9Y4K3 522 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 PCDHGB6Q9Y5F9 930 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 DNAJC15Q9Y5T4 150 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 HELZ2Q9BYK8 2649 aaKnown RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 PRRC2CQ9Y520 2896 aaKnown RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 MYO18BQ8IUG5 2567 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 MYOCOSA0A1B0GUC4 107 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 OR6C76A6NM76 312 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 PGRMC2O15173 223 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 PRAMEF2O60811 474 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 VPS4BO75351 444 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 SKAP2O75563 359 aaPredicted RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 ITGA10O75578 1167 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 DDAH2O95865 285 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 F10P00742 488 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 DDX5P17844 614 aaKnown RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 NT5EP21589 574 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 SSR4P51571 173 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 XKP51811 444 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 ABCE1P61221 599 aaKnown RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 RPL38P63173 70 aaKnown RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 RNF4P78317 190 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 RAE1P78406 368 aaKnown RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 TUBA3CQ13748 450 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 ZNF267Q14586 743 aaPredicted RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 OR1C1Q15619 314 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 INPP5JQ15735 1006 aaPredicted RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 ZNF766Q5HY98 468 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 FAM219BQ5XKK7 198 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 TUBA3EQ6PEY2 450 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 TRIM42Q8IWZ5 723 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 GPALPP1Q8IXQ4 340 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 CYP4Z2PQ8N1L4 340 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 LRRC25Q8N386 305 aaPredicted RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 NUBPLQ8TB37 319 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 SLC22A8Q8TCC7 542 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 ZNF721Q8TF20 911 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 C16orf78Q8WTQ4 265 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 ASB15Q8WXK1 588 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 PPWD1Q96BP3 646 aaKnown RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 TLCD1Q96CP7 247 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 C11orf24Q96F05 449 aaPredicted RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 PPP3R2Q96LZ3 170 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 NPAS2Q99743 824 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 ACBD3Q9H3P7 528 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 VIPAS39Q9H9C1 493 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 TNFRSF12AQ9NP84 129 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 LRFN1Q9P244 771 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 MYOTQ9UBF9 498 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 VPS4AQ9UN37 437 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 CFL2Q9Y281 166 aa12.08□□□□□ -0.48
CLK3-224ENST00000568605 POLR3HQ9Y535 204 aaPredicted RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 COPG1Q9Y678 874 aaKnown RBP12.08□□□□□ -0.48
CLK3-224ENST00000568605 TMEM233B4DJY2 109 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 PIP5K1BO14986 540 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 IGKV3-11P04433 115 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 ATP1B1P05026 303 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 LINC00032P0C843 101 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 NTSP30990 170 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 TRHRP34981 398 aaPredicted RBP12.07□□□□□ -0.48
CLK3-224ENST00000568605 ASMTP46597 345 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 HLCSP50747 726 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 FOXK1P85037 733 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 GALNTL6Q49A17 601 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 ATP6AP1LQ52LC2 224 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 HLA-DQA1Q5Y7H0 255 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 NOXRED1Q6NXP6 359 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 VWA5B2Q8N398 1253 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 BCORP1Q8N888 145 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 CATSPER1Q8NEC5 780 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 OR6Y1Q8NGX8 325 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 RAB3IL1Q8TBN0 382 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 MIB2Q96AX9 1013 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 EXOSC8Q96B26 276 aaKnown RBP12.07□□□□□ -0.48
CLK3-224ENST00000568605 ZBTB9Q96C00 473 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 SENP5Q96HI0 755 aaPredicted RBP12.07□□□□□ -0.48
CLK3-224ENST00000568605 GAL3ST4Q96RP7 486 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 BRINP2Q9C0B6 783 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 CXorf21Q9HAI6 301 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 CES1P1Q9UKY3 287 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 ERVK-11Q9UQG0 969 aa12.07□□□□□ -0.48
CLK3-224ENST00000568605 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.07□□□□□ -0.48
CLK3-224ENST00000568605 KLF13Q9Y2Y9 288 aaPredicted RBP12.07□□□□□ -0.48
CLK3-224ENST00000568605 RAP2CQ9Y3L5 183 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms