RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 GLYR1Q49A26 553 aaPredicted RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 ERAP2Q6P179 960 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SHFQ7M4L6 423 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 COMTD1Q86VU5 262 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 OR8J1Q8NGP2 316 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 CREB3L4Q8TEY5 395 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SLC7A6Q92536 515 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 C1GALT1C1Q96EU7 318 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 PDXPQ96GD0 296 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 LRR1Q96L50 414 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 EFCAB11Q9BUY7 163 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SLC46A2Q9BY10 475 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SLC22A4Q9H015 551 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SPG21Q9NZD8 308 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 PLEKHB1Q9UF11 243 aaPredicted RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 B4DXG7 233 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 ANHXE9PGG2 379 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 M0R3H8 397 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 FOXE1O00358 373 aaPredicted RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 TEX28O15482 410 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SCO2O43819 266 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 B4GALT2O60909 372 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 CTSLP07711 333 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 POLR2EP19388 210 aaKnown RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 ENDOUP21128 410 aaKnown RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 UQCRC2P22695 453 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 MYL9P24844 172 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 TMEM215Q68D42 235 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 ZNF438Q7Z4V0 828 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 TCEAL8Q8IYN2 117 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 PROKR2Q8NFJ6 384 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SLC5A11Q8WWX8 675 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 GATAD2BQ8WXI9 593 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 RACGAP1Q9H0H5 632 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SNX7Q9UNH6 387 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 NME6O75414 186 aaPredicted RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 GPC1P35052 558 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 RPS25P62851 125 aaKnown RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 GPAT3Q53EU6 434 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 MEDAGQ5VYS4 303 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 C12orf73Q69YU5 71 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 VN1R5Q7Z5H4 357 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 OR52I1Q8NGK6 324 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 RSPH9Q9H1X1 276 aaPredicted RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 OR2AG1Q9H205 316 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 COMMD3Q9UBI1 195 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 MGAT4BQ9UQ53 548 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 GPR52Q9Y2T5 361 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SCN5AQ14524 2016 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 IQCMA0A1B0GVH7 501 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 ARRDC5A6NEK1 342 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 K7ESM1 405 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 SRPRAP08240 638 aaKnown RBP12.52□□□□□ -0.4
CLN3-210ENST00000563874 ITGB7P26010 798 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 KIR2DL3P43628 341 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 MLLT11Q13015 90 aaPredicted RBP12.52□□□□□ -0.4
CLN3-210ENST00000563874 LHX8Q68G74 356 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 ACSM5Q6NUN0 579 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 NXPE4Q6UWF7 544 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 GDPGP1Q6ZNW5 385 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 CCDC149Q6ZUS6 474 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 NOXA1Q86UR1 476 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 ADGRF3Q8IZF5 1079 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 ATP6V1C2Q8NEY4 427 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 OR5D16Q8NGK9 328 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 UCN3Q969E3 161 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 EXOSC8Q96B26 276 aaKnown RBP12.52□□□□□ -0.4
CLN3-210ENST00000563874 TIFAQ96CG3 184 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 WDFY2Q96P53 400 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 SEC14L3Q9UDX4 400 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 PRKAB1Q9Y478 270 aa12.52□□□□□ -0.4
CLN3-210ENST00000563874 PLXND1Q9Y4D7 1925 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 TRAV19A0A0A6YYK7 116 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 ELFN1P0C7U0 828 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 APEX1P27695 318 aaKnown RBP12.52□□□□□ -0.41
CLN3-210ENST00000563874 RPL3P39023 403 aaKnown RBP12.52□□□□□ -0.41
CLN3-210ENST00000563874 WDR5P61964 334 aaKnown RBP12.52□□□□□ -0.41
CLN3-210ENST00000563874 PCDH1Q08174 1060 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 GINS1Q14691 196 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 SYPL1Q16563 259 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 SYT14P1Q58G82 188 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 SAXO2Q658L1 398 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 TM9SF4Q92544 642 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 RNF170Q96K19 258 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 F2RL3Q96RI0 385 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 GPA33Q99795 319 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 HCN2Q9UL51 889 aa12.52□□□□□ -0.41
CLN3-210ENST00000563874 C5orf42Q9H799 3197 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 A0A0G2JN53 185 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 PLA2G10O15496 165 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 SLC28A2O43868 658 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 PRKCAP17252 672 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 METAP1P53582 386 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 SLC7A9P82251 487 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 CNTN1Q12860 1018 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 ASAH1Q13510 395 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 CRTC2Q53ET0 693 aaPredicted RBP12.51□□□□□ -0.41
CLN3-210ENST00000563874 TMEM201Q5SNT2 666 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 PODNL1Q6PEZ8 512 aa12.51□□□□□ -0.41
CLN3-210ENST00000563874 C6orf120Q7Z4R8 191 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms