RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 MAP2K3P46734 347 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 MANFP55145 182 aaKnown RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 RPS25P62851 125 aaKnown RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 PIN1Q13526 163 aaPredicted RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 GINS1Q14691 196 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 GPR19Q15760 415 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 TATDN3Q17R31 274 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 TCTN1Q2MV58 587 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 TYW3Q6IPR3 259 aaKnown RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 PDZD3Q86UT5 571 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 GLCCI1Q86VQ1 547 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 PEX5LQ8IYB4 626 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 APOBEC4Q8WW27 367 aaKnown RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 GATAD2BQ8WXI9 593 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 MYLIPQ8WY64 445 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 MRPS31Q92665 395 aaKnown RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 IGSF21Q96ID5 467 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 TM9SF2Q99805 663 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 ACOXLQ9NUZ1 547 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 SEC14L3Q9UDX4 400 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 HELZP42694 1942 aaKnown RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 TMEM88BA6NKF7 163 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 SLC30A4O14863 429 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 GRM6O15303 877 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 C1orf105O95561 183 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 XPAP23025 273 aaPredicted RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 ERP29P30040 261 aaKnown RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 MAN2A2P49641 1150 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 BNC1Q01954 994 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 FAPQ12884 760 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 TMEM115Q12893 351 aaPredicted RBP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 GPNMBQ14956 572 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 POM121L1PQ3SYA9 428 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 HTR3DQ70Z44 454 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 SZRD1Q7Z422 152 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 CPXM2Q8N436 756 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 OR52P1PQ8NH57 321 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 SLC7A13Q8TCU3 470 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 ZSCAN5AQ9BUG6 496 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 KATNB1Q9BVA0 655 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 MCOLN1Q9GZU1 580 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 MVB12BQ9H7P6 319 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 GSTK1Q9Y2Q3 226 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 INSL5Q9Y5Q6 135 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 CLCA3PQ9Y6N3 262 aa13.26□□□□□ -0.29
VPS9D1-202ENST00000561976 PITPNM1O00562 1244 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 OLFM2O95897 454 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 GJA1P17302 382 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 CPN2P22792 545 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 HLA-DMAP28067 261 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 WNT4P56705 351 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 HSPB3Q12988 150 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 EFR3AQ14156 821 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 SYT14P1Q58G82 188 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 RNLSQ5VYX0 342 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 C11orf74Q86VG3 221 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 CFAP206Q8IYR0 622 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 Q8N402 240 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 OR4D11Q8NGI4 311 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 SLC5A11Q8WWX8 675 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 AUTS2Q8WXX7 1259 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 WFDC6Q9BQY6 131 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 GON7Q9BXV9 100 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 SMG9Q9H0W8 520 aaKnown RBP13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 IL21Q9HBE4 155 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 ANHXE9PGG2 379 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 ERVH48-1M5A8F1 160 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 CASKO14936 926 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 IRS1P35568 1242 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 INPP1P49441 399 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 PRLHRP49683 370 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 SMIM11AP58511 58 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 GPLD1P80108 840 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 CNTN1Q12860 1018 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 SNAPC1Q16533 368 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 PLK5Q496M5 336 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 HENMT1Q5T8I9 393 aaKnown RBP13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 MZT2BQ6NZ67 158 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 FAM26EQ8N5C1 309 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 GLYATL1Q969I3 302 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 ZNF354BQ96LW1 612 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 ZNF582Q96NG8 517 aaPredicted RBP13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 NECTIN4Q96NY8 510 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 POLDIP3Q9BY77 421 aaKnown RBP13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 A4GALTQ9NPC4 353 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 DKK3Q9UBP4 350 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 ALG5Q9Y673 324 aa13.25□□□□□ -0.29
VPS9D1-202ENST00000561976 TRAV19A0A0A6YYK7 116 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 FAM240BA0A1B0GVZ2 78 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 A0A1W2PQ45 241 aaPredicted RBP13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 A0A1W2PQY0 241 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 SLC28A2O43868 658 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 DCDC1P59894 354 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 IL18Q14116 193 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 FLYWCH1Q4VC44 716 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 KLHL22Q53GT1 634 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 FAM209AQ5JX71 171 aa13.24□□□□□ -0.29
VPS9D1-202ENST00000561976 ACSM5Q6NUN0 579 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms