RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CCDC28BQ9BUN5 200 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 PSME2Q9UL46 239 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 G3BP2Q9UN86 482 aaKnown RBP20.31■□□□□ 0.84
SNX1-210ENST00000560260 GPR45Q9Y5Y3 372 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 DOCK10Q96BY6 2186 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 A6NL46 340 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 MYO1GB0I1T2 1018 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 E9PBE3 544 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 POLR3GO15318 223 aaPredicted RBP20.3■□□□□ 0.84
SNX1-210ENST00000560260 KLHL41O60662 606 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CEACAM4O75871 244 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 SERPINA7P05543 415 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CSNK2A2P19784 350 aaPredicted RBP20.3■□□□□ 0.84
SNX1-210ENST00000560260 HPCAL1P37235 193 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CCL11P51671 97 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 NME5P56597 212 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CLDN8P56748 225 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 SOX8P57073 446 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 C21orf58P58505 322 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 MGAT2Q10469 447 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 EXT1Q16394 746 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 SPRED3Q2MJR0 410 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 ACAD11Q709F0 780 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 KBTBD2Q8IY47 623 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 LRRC25Q8N386 305 aaPredicted RBP20.3■□□□□ 0.84
SNX1-210ENST00000560260 GALNT16Q8N428 558 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 B3GNT7Q8NFL0 401 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 OR14A16Q8NHC5 309 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 SLC2A12Q8TD20 617 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 PSMF1Q92530 271 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 NCLNQ969V3 563 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CIDECQ96AQ7 238 aaPredicted RBP20.3■□□□□ 0.84
SNX1-210ENST00000560260 PPCDCQ96CD2 204 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 TEX37Q96LM6 180 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 PELOQ9BRX2 385 aaKnown RBP20.3■□□□□ 0.84
SNX1-210ENST00000560260 BRINP2Q9C0B6 783 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CXorf21Q9HAI6 301 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 MMP25Q9NPA2 562 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 ENTPD4Q9Y227 616 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CLCA3PQ9Y6N3 262 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 ZNF780BQ9Y6R6 833 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CROCCQ5TZA2 2017 aa20.3■□□□□ 0.84
SNX1-210ENST00000560260 CLPSP04118 112 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 ATP1B1P05026 303 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 TNNI3P19429 210 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 NT5EP21589 574 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 ITGA3P26006 1051 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 GALNSP34059 522 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 PGDP52209 483 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 POLE2P56282 527 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 BIKQ13323 160 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 FAM111BQ6SJ93 734 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 PCSK4Q6UW60 755 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 CCDC116Q8IYX3 515 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 ADCY4Q8NFM4 1077 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 FDCSPQ8NFU4 85 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 OR9A2Q8NGT5 310 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 M1APQ8TC57 530 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 BRIX1Q8TDN6 353 aaKnown RBP20.29■□□□□ 0.84
SNX1-210ENST00000560260 ELP5Q8TE02 316 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 ZNF721Q8TF20 911 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 STON2Q8WXE9 905 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 MTERF3Q96E29 417 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 RBM18Q96H35 190 aaKnown RBP20.29■□□□□ 0.84
SNX1-210ENST00000560260 THOC3Q96J01 351 aaKnown RBP20.29■□□□□ 0.84
SNX1-210ENST00000560260 NUDT9Q9BW91 350 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 OR8D2Q9GZM6 311 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 MAT2BQ9NZL9 334 aa20.29■□□□□ 0.84
SNX1-210ENST00000560260 A0A0G2JND7 137 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 C9JVG2 144 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 UBDO15205 165 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 PRKNO60260 465 aaPredicted RBP20.28■□□□□ 0.84
SNX1-210ENST00000560260 IGKV3-11P04433 115 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 LAMP1P11279 417 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 COX7A2P14406 83 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 EFNA1P20827 205 aaPredicted RBP20.28■□□□□ 0.84
SNX1-210ENST00000560260 PRPS1L1P21108 318 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 IL12AP29459 219 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 LSP1P33241 339 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 SEC24CP53992 1094 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 UFM1P61960 85 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 GNGT1P63211 74 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 PRICKLE4Q2TBC4 344 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 GALNT12Q8IXK2 581 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 MORN4Q8NDC4 146 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 SIMC1Q8NDZ2 872 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 DAZLQ92904 295 aaKnown RBP20.28■□□□□ 0.84
SNX1-210ENST00000560260 RIT1Q92963 219 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 CHMP6Q96FZ7 201 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 FBXL20Q96IG2 436 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 NPAS2Q99743 824 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 TMEM120AQ9BXJ8 343 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 DPY30Q9C005 99 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 SEMA4CQ9C0C4 833 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 GLIPR2Q9H4G4 154 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 SH3BP4Q9P0V3 963 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 ERVK-19Q9WJR5 959 aa20.28■□□□□ 0.84
SNX1-210ENST00000560260 PDPK1O15530 556 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 FAM87AP0C7U9 286 aa20.27■□□□□ 0.84
SNX1-210ENST00000560260 TROVE2P10155 538 aaKnown RBP eCLIP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms