RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 CPNE7Q9UBL6 633 aa16.82■□□□□ 0.28
SNX1-208ENST00000559844 SAMHD1Q9Y3Z3 626 aaKnown RBP16.82■□□□□ 0.28
SNX1-208ENST00000559844 FLRT2O43155 660 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 GFRA3O60609 400 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 VIPP01282 170 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 HIST1H1TP22492 207 aaPredicted RBP16.81■□□□□ 0.28
SNX1-208ENST00000559844 PRKACGP22612 351 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 IGFBP5P24593 272 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 NTSP30990 170 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 ALDH3B2P48448 385 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 RPS6KA3P51812 740 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 CASP9P55211 416 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 PLCL1Q15111 1095 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 C14orf28Q4W4Y0 310 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 MRM1Q6IN84 353 aaKnown RBP16.81■□□□□ 0.28
SNX1-208ENST00000559844 DBX2Q6ZNG2 339 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 ZNF347Q96SE7 839 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 EPYCQ99645 322 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 ING2Q9H160 280 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 A4GALTQ9NPC4 353 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 RP1P56715 2156 aa16.81■□□□□ 0.28
SNX1-208ENST00000559844 A0A0G2JN53 185 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 BTN3A3O00478 584 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 ITGAMP11215 1152 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 MYF5P13349 255 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 CD59P13987 128 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 ITGA2P17301 1181 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 CDH2P19022 906 aaPredicted RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 ATP5A1P25705 553 aaKnown RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 HHEXQ03014 270 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 PPP1R8Q12972 351 aaKnown RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 HSPB3Q12988 150 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 SLAMF1Q13291 335 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 KCNAB2Q13303 367 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 ARL14Q8N4G2 192 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 AMER3Q8N944 861 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 SPPL2AQ8TCT8 520 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 ADAMTS16Q8TE57 1224 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 TWSG1Q9GZX9 223 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 RUBCNLQ9H714 662 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 POT1Q9NUX5 634 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 THUMPD1Q9NXG2 353 aaKnown RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 ANKMY1Q9P2S6 941 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 TMEFF2Q9UIK5 374 aaPredicted RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 PTPRZ1P23471 2315 aaPredicted RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 ASXL3Q9C0F0 2248 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 SLC16A6O15403 523 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 C9P02748 559 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 PCBP3P57721 371 aaKnown RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 UBE2IP63279 158 aaKnown RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 RGS1Q08116 209 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 IQCCQ4KMZ1 466 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 RBM48Q5RL73 367 aaKnown RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 STPG1Q5TH74 334 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 CEACAM20Q6UY09 585 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 RBM44Q6ZP01 1051 aaKnown RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 C17orf82Q86X59 251 aaPredicted RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 ACOT4Q8N9L9 421 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 TAMM41Q96BW9 452 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 AMBRA1Q9C0C7 1298 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 SLC35C2Q9NQQ7 365 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 SIRT3Q9NTG7 399 aaPredicted RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 LYARQ9NX58 379 aaKnown RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 ASB4Q9Y574 426 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 PCDHGB3Q9Y5G1 929 aa16.8■□□□□ 0.28
SNX1-208ENST00000559844 COL5A1P20908 1838 aaPredicted RBP16.8■□□□□ 0.28
SNX1-208ENST00000559844 LOC100130705A0A1B0GUX0 176 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 FAM221BA6H8Z2 402 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 TMEM229AB2RXF0 380 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 C5orf58C9J3I9 102 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 M0QX08 132 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 ADAMDEC1O15204 470 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 PPM1DO15297 605 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 SH3BP5O60239 455 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 UGT2B11O75310 529 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 MAGEA8P43361 318 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 FASLGP48023 281 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 SH3BGRP55822 239 aaPredicted RBP16.79■□□□□ 0.28
SNX1-208ENST00000559844 REEP3Q6NUK4 255 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 C6orf120Q7Z4R8 191 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 ARMC8Q8IUR7 673 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 FAM181AQ8N9Y4 354 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 AVL9Q8NBF6 648 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 OR8K5Q8NH50 307 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 NT5CQ8TCD5 201 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 RHBDD1Q8TEB9 315 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 GAL3ST3Q96A11 431 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 TMEM121BQ9BXQ6 578 aaPredicted RBP16.79■□□□□ 0.28
SNX1-208ENST00000559844 THSD1Q9NS62 852 aa16.79■□□□□ 0.28
SNX1-208ENST00000559844 DDX18Q9NVP1 670 aaKnown RBP16.79■□□□□ 0.28
SNX1-208ENST00000559844 PDP1Q9P0J1 537 aaPredicted RBP16.79■□□□□ 0.28
SNX1-208ENST00000559844 OR6B1O95007 311 aa16.78■□□□□ 0.28
SNX1-208ENST00000559844 DIRAS1O95057 198 aa16.78■□□□□ 0.28
SNX1-208ENST00000559844 HOXB3P14651 431 aaPredicted RBP16.78■□□□□ 0.28
SNX1-208ENST00000559844 CDK9P50750 372 aaKnown RBP16.78■□□□□ 0.28
SNX1-208ENST00000559844 CDH15P55291 814 aa16.78■□□□□ 0.28
SNX1-208ENST00000559844 ESRRGP62508 458 aa16.78■□□□□ 0.28
SNX1-208ENST00000559844 TOP3AQ13472 1001 aaPredicted RBP16.78■□□□□ 0.28
SNX1-208ENST00000559844 KDM4DQ6B0I6 523 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms