RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PSMD11O00231 422 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 FRS3O43559 492 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 OSMP13725 252 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 CCT3P49368 545 aaKnown RBP12.21□□□□□ -0.46
LDLR-207ENST00000558013 XKP51811 444 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 CDC20Q12834 499 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 SPANXN2Q5MJ10 180 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 LAX1Q8IWV1 398 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 OR8H2Q8N162 312 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 LINC01555Q8NAE3 123 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 RAD51AP1Q96B01 352 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 CRELD1Q96HD1 420 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 TEFMQ96QE5 360 aaKnown RBP12.21□□□□□ -0.46
LDLR-207ENST00000558013 MS4A8Q9BY19 250 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 KLHL31Q9H511 634 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 CPNE5Q9HCH3 593 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 TRPC4Q9UBN4 977 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 TMCC3Q9ULS5 477 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 ICKQ9UPZ9 632 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 OR1A2Q9Y585 309 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 KNL1Q8NG31 2342 aa12.21□□□□□ -0.46
LDLR-207ENST00000558013 PLD2O14939 933 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 EPPINO95925 133 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 TP53P04637 393 aaPredicted RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 H1F0P07305 194 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 CLEC2LP0C7M8 214 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 C8orf89P0DMQ9 161 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 WASP42768 502 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ZNF45Q02386 682 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ZNF91Q05481 1191 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ACSM5Q6NUN0 579 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 TMEM53Q6P2H8 277 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 CCDC190Q86UF4 302 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 AMZ2Q86W34 360 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 TP53I13Q8NBR0 393 aaPredicted RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 SMPDL3AQ92484 453 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 KLK6Q92876 244 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ZG16BQ96DA0 208 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 CCDC59Q9P031 241 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 GPR52Q9Y2T5 361 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 LSM2Q9Y333 95 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 A8MV72 311 aaPredicted RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 C4orf51C9J302 202 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 MED26O95402 600 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 OXSR1O95747 527 aaPredicted RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 PRNPP04156 253 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 PCBP4P57723 403 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 OLR1P78380 273 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 SPHARQ15513 63 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 PODNL1Q6PEZ8 512 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 UNC5DQ6UXZ4 953 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 SHFQ7M4L6 423 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 AKAP14Q86UN6 197 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 KRT78Q8N1N4 520 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 MTERF3Q96E29 417 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 LRIG1Q96JA1 1093 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ZCCHC2Q9C0B9 1178 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 OR51I1Q9H343 314 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ANKHQ9HCJ1 492 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 MARK1Q9P0L2 795 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 A4GNTQ9UNA3 340 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 KLHL20Q9Y2M5 609 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 TSC22D4Q9Y3Q8 395 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 KCNE3Q9Y6H6 103 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 AP1M2Q9Y6Q5 423 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ISPDA4D126 451 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 IGLON5A6NGN9 336 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 H3BQ06 376 aaPredicted RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 SRPRAP08240 638 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 ITGB7P26010 798 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 RPL3P39023 403 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 CRYBB2P43320 205 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 KCNJ5P48544 419 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 CLCNKAP51800 687 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 HOXC5Q00444 222 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 DUSP2Q05923 314 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 MAP4K2Q12851 820 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ELOAQ14241 798 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 ZNF234Q14588 700 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 BAK1Q16611 211 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 NRARPQ7Z6K4 114 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 ZER1Q7Z7L7 766 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 PDZD3Q86UT5 571 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 PAWRQ96IZ0 340 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 TSSK6Q9BXA6 273 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 PLA2G12AQ9BZM1 189 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 POLR2J2Q9GZM3 115 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 TBC1D24Q9ULP9 559 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 MRPS23Q9Y3D9 190 aaKnown RBP12.2□□□□□ -0.46
LDLR-207ENST00000558013 PEX16Q9Y5Y5 336 aa12.2□□□□□ -0.46
LDLR-207ENST00000558013 TRPM6Q9BX84 2022 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 IGKV1-8A0A0C4DH67 115 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 A0A1W2PPV9 198 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 SAGE2PA6NJ88 616 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 A6NL46 340 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 ERAL1O75616 437 aaKnown RBP12.19□□□□□ -0.46
LDLR-207ENST00000558013 MMP11P24347 488 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 P2RY2P41231 377 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 TAB1Q15750 504 aa12.19□□□□□ -0.46
LDLR-207ENST00000558013 HNRNPA1L2Q32P51 320 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms