RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 UHMK1Q8TAS1 419 aaKnown RBP6.81□□□□□ -1.32
SCFD1-222ENST00000556768 PTPMT1Q8WUK0 201 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-222ENST00000556768 MTFMTQ96DP5 389 aaKnown RBP6.81□□□□□ -1.32
SCFD1-222ENST00000556768 SENP5Q96HI0 755 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-222ENST00000556768 GPR78Q96P69 363 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 FRG2BQ96QU4 278 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 CSF3RQ99062 836 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 NPAS2Q99743 824 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 NTMT1Q9BV86 223 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 HES7Q9BYE0 225 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 ADAM19Q9H013 955 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 XPR1Q9UBH6 696 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 SH3BGRL2Q9UJC5 107 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 PSME2Q9UL46 239 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 SNX6Q9UNH7 406 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 RNF11Q9Y3C5 154 aa6.81□□□□□ -1.32
SCFD1-222ENST00000556768 CCDC151A5D8V7 595 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ACOT7O00154 380 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 WWP2O00308 870 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PLPP1O14494 284 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PROM1O43490 865 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PEX1O43933 1283 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PEX14O75381 377 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 GPR75O95800 540 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ABHD2P08910 425 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 FAM58BPP0C7Q3 252 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 CA7P43166 264 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 STT3AP46977 705 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 GPR143P51810 404 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 NEK2P51955 445 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 HNRNPFP52597 415 aaKnown RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 RNF4P78317 190 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 TBL3Q12788 808 aaKnown RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 TECRLQ5HYJ1 363 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ZNF468Q5VIY5 522 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 XKRXQ6PP77 449 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 VHLLQ6RSH7 139 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ZNF793Q6ZN11 406 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 RGS9BPQ6ZS82 235 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 SLC29A4Q7RTT9 530 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 UBE3DQ7Z6J8 389 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ST13P4Q8IZP2 240 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 CPSF7Q8N684 471 aaKnown RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 TMEM52Q8NDY8 209 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 SLC2A12Q8TD20 617 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 RIT1Q92963 219 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ISL2Q96A47 359 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 DDX31Q9H8H2 851 aaKnown RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 CHST11Q9NPF2 352 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 DNAJB12Q9NXW2 375 aaKnown RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 MYOCOSA0A1B0GUC4 107 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 CAPN14A8MX76 684 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 SEMA3DO95025 777 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 CLDN1O95832 211 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 P04436 131 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 RHOXF2BP0C7M4 288 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 NR2F6P10588 404 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ALOX15P16050 662 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PIK3R1P27986 724 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 DEKP35659 375 aaKnown RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 MEOX1P50221 254 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 TNFRSF17Q02223 184 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PLGLB1Q02325 96 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ID2Q02363 134 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 FOLH1Q04609 750 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ART3Q13508 389 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 MPEG1Q2M385 716 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 CCNYL2Q5T2Q4 361 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 HLA-DQA1Q5Y7H0 255 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ARHGAP11AQ6P4F7 1023 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 MRGPRGQ86SM5 289 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 SLC22A16Q86VW1 577 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 OR4N5Q8IXE1 308 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 DND1Q8IYX4 353 aaKnown RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PLD6Q8N2A8 252 aaKnown RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ZNF808Q8N4W9 903 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PSD4Q8NDX1 1056 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 SLC22A8Q8TCC7 542 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 DCAKDQ8WVC6 231 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 FBXL20Q96IG2 436 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 RASL10BQ96S79 203 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 RHOXF2Q9BQY4 288 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 SEMA4BQ9NPR2 832 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-222ENST00000556768 PCTPQ9UKL6 214 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 ATG4BQ9Y4P1 393 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 CCDC88CQ9P219 2028 aa6.8□□□□□ -1.32
SCFD1-222ENST00000556768 MDC1Q14676 2089 aaKnown RBP6.79□□□□□ -1.32
SCFD1-222ENST00000556768 LRRC14BA6NHZ5 514 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 GOLGA6L10A6NI86 522 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 PRSS44E7EML9 344 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 RIPK2O43353 540 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 HNRNPRO43390 633 aaKnown RBP6.79□□□□□ -1.32
SCFD1-222ENST00000556768 HS6ST1O60243 411 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 FGF17O60258 216 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 SUSD5O60279 629 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 CDC40O60508 579 aaKnown RBP eCLIP6.79□□□□□ -1.32
SCFD1-222ENST00000556768 SUPT7LO94864 414 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 AVPP01185 164 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 KRT6AP02538 564 aa6.79□□□□□ -1.32
SCFD1-222ENST00000556768 KRT6BP04259 564 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms