RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 TBCDQ9BTW9 1192 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 RBM24Q9BX46 236 aaKnown RBP8.31□□□□□ -1.08
SYNE2-209ENST00000553308 CAPS2Q9BXY5 557 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 UGT2B28Q9BY64 529 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 ROGDIQ9GZN7 287 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 UBQLN3Q9H347 655 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 GALNT8Q9NY28 637 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 ASIC3Q9UHC3 531 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 SPACA6W5XKT8 324 aa8.31□□□□□ -1.08
SYNE2-209ENST00000553308 IQANK1A0A1B0GTG1 560 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 SH3D21A4FU49 640 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 ARHGEF9O43307 516 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 DYRK3O43781 588 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 IL18BPO95998 194 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 TGFB1P01137 390 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 CLPSP04118 112 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 HPNP05981 417 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 TMIGD3P0DMS9 266 aaPredicted RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 PCNAP12004 261 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 ALOX15P16050 662 aaPredicted RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 GGT5P36269 586 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 SLCO1A2P46721 670 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 MASP1P48740 699 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 HNRNPH2P55795 449 aaKnown RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 SLC37A1P57057 533 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 FBXW4P57775 412 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 TNFRSF17Q02223 184 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 FOXF2Q12947 444 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 ZNF267Q14586 743 aaPredicted RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 RPS6KA2Q15349 733 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 PPP1R7Q15435 360 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 PDK4Q16654 411 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 AP5B1Q2VPB7 878 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 EIPR1Q53HC9 387 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 WIPI1Q5MNZ9 446 aaPredicted RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 TBCELQ5QJ74 424 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 STEAP4Q687X5 459 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 PLXDC2Q6UX71 529 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 ZNF662Q6ZS27 426 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 SYDE1Q6ZW31 735 aaPredicted RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 LUZP2Q86TE4 346 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 P3H2Q8IVL5 708 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 RNF175Q8N4F7 328 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 SRFBP1Q8NEF9 429 aaKnown RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 SPPL2AQ8TCT8 520 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 GRK7Q8WTQ7 553 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 SMPDL3BQ92485 455 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 RBM18Q96H35 190 aaKnown RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 Q96MF0 132 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 RILPQ96NA2 401 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 DACH2Q96NX9 599 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 GNRHR2Q96P88 292 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 KRT12Q99456 494 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 EFCAB11Q9BUY7 163 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 PHACTR1Q9C0D0 580 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 OR51B5Q9H339 312 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 RPF2Q9H7B2 306 aaKnown RBP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 PRM3Q9NNZ6 103 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.3□□□□□ -1.08
SYNE2-209ENST00000553308 ADAM21Q9UKJ8 722 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 C15orf41Q9Y2V0 281 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 DOCK7Q96N67 2140 aa8.3□□□□□ -1.08
SYNE2-209ENST00000553308 ANKRD33BA6NCL7 494 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 TRIM64A6NGJ6 449 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 TRIM64BA6NI03 449 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 WASHC1A8K0Z3 465 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 INAFM1C9JVW0 142 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 PGRMC1O00264 195 aaKnown RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 CCNT2O60583 730 aaKnown RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 SMPD2O60906 423 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 ERN1O75460 977 aaKnown RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 STK16O75716 305 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 WISP3O95389 354 aaPredicted RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 SSTR4P31391 388 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 CPA2P48052 419 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 FNTAP49354 379 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 NAGLUP54802 743 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 IRF8Q02556 426 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 CHIT1Q13231 466 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 SLAMF1Q13291 335 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 RCAN2Q14206 197 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 TOMM20Q15388 145 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 SF3B4Q15427 424 aaKnown RBP eCLIP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 OR4D1Q15615 310 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 SPRED3Q2MJR0 410 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 TMEM35AQ53FP2 167 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 NHSL2Q5HYW2 709 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 PAGE2BQ5JRK9 111 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 CXXC5Q7LFL8 322 aaKnown RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 GAS2L3Q86XJ1 694 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 GPSM1Q86YR5 675 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 ST13P4Q8IZP2 240 aaPredicted RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 TCAIMQ8N3R3 496 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 ZNF441Q8N8Z8 693 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 SLC44A1Q8WWI5 657 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 ABTB1Q969K4 478 aaPredicted RBP8.29□□□□□ -1.08
SYNE2-209ENST00000553308 VPS39Q96JC1 886 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 ANGPTL4Q9BY76 406 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 DERL2Q9GZP9 239 aa8.29□□□□□ -1.08
SYNE2-209ENST00000553308 CNOT10Q9H9A5 744 aaKnown RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms