RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 KHDRBS2Q5VWX1 349 aaKnown RBP7.81□□□□□ -1.16
USP28-215ENST00000545608 C18orf63Q68DL7 685 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 RTL6Q6ICC9 239 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 OR4C11Q6IEV9 310 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 GRHL2Q6ISB3 625 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 OPN5Q6U736 354 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 ACAD11Q709F0 780 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 RAPH1Q70E73 1250 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 C9orf40Q8IXQ3 194 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 DMRTC2Q8IXT2 367 aaPredicted RBP7.81□□□□□ -1.16
USP28-215ENST00000545608 FAM109AQ8N4B1 249 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 TEX9Q8N6V9 391 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 SPATA4Q8NEY3 305 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 OR5M3Q8NGP4 307 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 OR10Q1Q8NGQ4 319 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 HUS1BQ8NHY5 278 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 NUBPLQ8TB37 319 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 UBTD2Q8WUN7 234 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 KCTD4Q8WVF5 259 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 UCN3Q969E3 161 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 UBE2E3Q969T4 207 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 CMTM7Q96FZ5 175 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 DGAT2Q96PD7 388 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 TTYH2Q9BSA4 534 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 RPF2Q9H7B2 306 aaKnown RBP7.81□□□□□ -1.16
USP28-215ENST00000545608 NMRAL1Q9HBL8 299 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 SH2D2AQ9NP31 389 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 NUDT4Q9NZJ9 180 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 OPTCQ9UBM4 332 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 ATG4BQ9Y4P1 393 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 FAM215AQ9Y5M1 114 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 SPACA6W5XKT8 324 aa7.81□□□□□ -1.16
USP28-215ENST00000545608 OR14I1A6ND48 311 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 PLPP1O14494 284 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 AQP7O14520 342 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 BCKDKO14874 412 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 HOXD4P09016 255 aaPredicted RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 LTA4HP09960 611 aaKnown RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 RFPL3SP0C7P2 107 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 COX7A2P14406 83 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 ENDOUP21128 410 aaKnown RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 CRABP2P29373 138 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 GSTT1P30711 240 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 ADH7P40394 386 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 MAGEA4P43358 317 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 MAN2A2P49641 1150 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 PLTPP55058 493 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 RPS13P62277 151 aaKnown RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 IRF9Q00978 393 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 SLMAPQ14BN4 828 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 PRAMEF20Q5VT98 475 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 SLC22A10Q63ZE4 541 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 MRM1Q6IN84 353 aaKnown RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 ZDHHC24Q6UX98 284 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 MAATS1Q7Z4T9 603 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 TBC1D1Q86TI0 1168 aaPredicted RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 GPR180Q86V85 440 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 CCDC25Q86WR0 208 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 LIX1LQ8IVB5 337 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 ZCCHC7Q8N3Z6 543 aaKnown RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 FBXO25Q8TCJ0 367 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 PAQR8Q8TEZ7 354 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 RGMAQ96B86 450 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 RBM18Q96H35 190 aaKnown RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 MTERF1Q99551 399 aaKnown RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 CNPPD1Q9BV87 410 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 ZNF717Q9BY31 904 aaPredicted RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 TSPYL1Q9H0U9 437 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 PROK2Q9HC23 129 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 DMRT3Q9NQL9 472 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 ALKBH4Q9NXW9 302 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 SPRR3Q9UBC9 169 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 COPS7AQ9UBW8 275 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 ACAD8Q9UKU7 415 aa7.8□□□□□ -1.16
USP28-215ENST00000545608 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.8□□□□□ -1.16
USP28-215ENST00000545608 DNAJC13O75165 2243 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 TRGV5A0A0B4J1U4 118 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 A0A0G2JNJ9 132 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 A0A1W2PR48 441 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 HMX2A2RU54 273 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 GLOD5A6NK44 160 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 FOXO6A8MYZ6 492 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 PROM1O43490 865 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 TMPRSS11DO60235 418 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 KLK8O60259 260 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 SUSD5O60279 629 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 EEDO75530 441 aaKnown RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 GPR75O95800 540 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 C2P06681 752 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ALOX15P16050 662 aaPredicted RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 SERPINB1P30740 379 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 BSGP35613 385 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 PIK3CBP42338 1070 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ZFP36L2P47974 494 aaKnown RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 PIK3CGP48736 1102 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 RAP1GDS1P52306 607 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 DLX5P56178 289 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 RIPPLY3P57055 190 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 HERVK_113P63132 956 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ERVK-8P63133 956 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms