RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ABCG5Q9H222 651 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TUBB1Q9H4B7 451 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ANKRD19PQ9H560 264 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 NUDT15Q9NV35 164 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 UBP1Q9NZI7 540 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 AFF4Q9UHB7 1163 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TCRBV16S1A1N1A0A5B0 115 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 POM121CA8CG34 1229 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 CASKO14936 926 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 GRM6O15303 877 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SIX3O95343 332 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 NMBP08949 121 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 USP17L7P0C7H9 530 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 PRF1P14222 555 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 HPGDP15428 266 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 CRISP3P54108 245 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 KIAA1024LP59773 190 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SSX1Q16384 188 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 C21orf62-AS1Q17RA5 79 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SPDYE7PQ495Y7 208 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ATP13A5Q4VNC0 1218 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 PLAG1Q6DJT9 500 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ASB18Q6ZVZ8 466 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 MFSD6LQ8IWD5 586 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SLC39A11Q8N1S5 342 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 LNX2Q8N448 690 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 OXR1Q8N573 874 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 DCBLD1Q8N8Z6 715 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 PROKR1Q8TCW9 393 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 NETO1Q8TDF5 533 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SETD7Q8WTS6 366 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 C2orf15Q8WU43 125 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 FCRL1Q96LA6 429 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 EVA1AQ9H8M9 152 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ZNF451Q9Y4E5 1061 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 DBX1A6NMT0 343 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 CHURC1-FNTBB4DL54 471 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SLC19A2O60779 497 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ATG12O94817 140 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ACAA1P09110 424 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 HIST1H2AGP0C0S8 130 aaPredicted RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 HIST1H2ADP20671 130 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ITGB8P26012 769 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 GABRR2P28476 465 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SOX3P41225 446 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 LRRC74AQ0VAA2 488 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 CHAF1BQ13112 559 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SNTB1Q13884 538 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SPHARQ15513 63 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 NTRK2Q16620 822 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 MPEG1Q2M385 716 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 MARCH8Q5T0T0 291 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 HIST2H2AA3Q6FI13 130 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 MSANTD2Q6P1R3 559 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 ATRAIDQ6UW56 229 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TAS1R3Q7RTX0 852 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TRMT11Q7Z4G4 463 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 OR56A4Q8NGH8 313 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 DNAJB8Q8NHS0 232 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 NR4A3Q92570 626 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 RFT1Q96AA3 541 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 HIST1H2AHQ96KK5 128 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 HIST1H2AJQ99878 128 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 PRR14Q9BWN1 585 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TLR8Q9NR97 1041 aaKnown RBP10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 C14orf105Q9NVL8 296 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 VAPAQ9P0L0 249 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 SH3BP4Q9P0V3 963 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 POFUT2Q9Y2G5 429 aa10.38□□□□□ -0.75
CLSTN3-207ENST00000537408 TRBV23-1A0A0A0MS06 115 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 CLDN5O00501 218 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 CASC3O15234 703 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 LCMT2O60294 686 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 SELENOFO60613 162 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 SLC6A4P31645 630 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 KCNJ5P48544 419 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 RNF4P78317 190 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 CAMK2DQ13557 499 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 GK2Q14410 553 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 TAF1AQ15573 450 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 C6orf136Q5SQH8 315 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 PTCHD4Q6ZW05 846 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 CCDC71Q8IV32 467 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 TOP6BLQ8N6T0 577 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 RTL3Q8N8U3 475 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 NETO2Q8NC67 525 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 OR10Q1Q8NGQ4 319 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 WDR20Q8TBZ3 569 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 DPY30Q9C005 99 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 SARS2Q9NP81 518 aaKnown RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 C11orf16Q9NQ32 467 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 SLC22A11Q9NSA0 550 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 ZNF275Q9NSD4 429 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 TAS2R16Q9NYV7 291 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 SLC6A14Q9UN76 642 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 CD63P08962 238 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 FBP1P09467 338 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 TSTA3Q13630 321 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 GPR176Q14439 515 aa10.37□□□□□ -0.75
CLSTN3-207ENST00000537408 ELP2Q6IA86 826 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms