RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 OR1C1Q15619 314 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 CEBPEQ15744 281 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 SPINK14Q6IE38 97 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 C16orf47Q6ZP98 133 aaPredicted RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 NUDCD3Q8IVD9 361 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 C9orf40Q8IXQ3 194 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 GALNT11Q8NCW6 608 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 THAP3Q8WTV1 239 aaPredicted RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 RIT1Q92963 219 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 CNRIP1Q96F85 164 aaPredicted RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 PKNOX2Q96KN3 472 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.05□□□□□ -0.48
VPS28-216ENST00000533806 CENPHQ9H3R5 247 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 LIN28AQ9H9Z2 209 aaKnown RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 EML4Q9HC35 981 aaKnown RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 ANKRD10Q9NXR5 420 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 ABI3Q9P2A4 366 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 ZNF639Q9UID6 485 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 ZDHHC2Q9UIJ5 367 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 YARS2Q9Y2Z4 477 aaKnown RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 COPG1Q9Y678 874 aaKnown RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 RP1L1Q8IWN7 2480 aaPredicted RBP12.04□□□□□ -0.48
VPS28-216ENST00000533806 USP9XQ93008 2570 aaPredicted RBP12.04□□□□□ -0.48
VPS28-216ENST00000533806 TCP11X1B4DZS4 312 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 SLC28A1O00337 649 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 LSM1O15116 133 aaKnown RBP12.04□□□□□ -0.48
VPS28-216ENST00000533806 CRCPO75575 148 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 ITGA10O75578 1167 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 OR2J2O76002 312 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 ZWINTO95229 277 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 CBX6O95503 412 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 UQCRHP07919 91 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 ANXA4P09525 319 aaPredicted RBP12.04□□□□□ -0.48
VPS28-216ENST00000533806 CT62P0C5K7 136 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 PIK3R1P27986 724 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 HK2P52789 917 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 WDR4P57081 412 aaKnown RBP12.04□□□□□ -0.48
VPS28-216ENST00000533806 BTKQ06187 659 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 MAP4K2Q12851 820 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 INAQ16352 499 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 PRSS53Q2L4Q9 553 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 PRICKLE4Q2TBC4 344 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 XKR7Q5GH72 579 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 ZNF766Q5HY98 468 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 SPDYAQ5MJ70 313 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 FAM71E1Q6IPT2 247 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 NOXRED1Q6NXP6 359 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 ZNF615Q8N8J6 731 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 NUBPLQ8TB37 319 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 GRHL3Q8TE85 626 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 DOK4Q8TEW6 326 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 FAR1Q8WVX9 515 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 CTHRC1Q96CG8 243 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 ART5Q96L15 291 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 FAIM2Q9BWQ8 316 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 HES7Q9BYE0 225 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 C20orf27Q9GZN8 174 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 ZNF395Q9H8N7 513 aaPredicted RBP12.04□□□□□ -0.48
VPS28-216ENST00000533806 C1orf109Q9NX04 203 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 TAS2R7Q9NYW3 318 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 EHD3Q9NZN3 535 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 LRFN1Q9P244 771 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 HAO1Q9UJM8 370 aa12.04□□□□□ -0.48
VPS28-216ENST00000533806 WBP11Q9Y2W2 641 aaKnown RBP12.04□□□□□ -0.48
VPS28-216ENST00000533806 SHANK1Q9Y566 2161 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 LRRK2Q5S007 2527 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 GNG14A0A1W2PPG7 69 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 CLEC18AA5D8T8 446 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 FCHO1O14526 889 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 PIP5K1BO14986 540 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 ITM2AO43736 263 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 OR10H2O60403 315 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 NADKO95544 446 aaPredicted RBP12.03□□□□□ -0.48
VPS28-216ENST00000533806 SERPINE1P05121 402 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 SP1P08047 785 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 LINC00032P0C843 101 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 H2AFXP16104 143 aaPredicted RBP12.03□□□□□ -0.48
VPS28-216ENST00000533806 CSNK2A2P19784 350 aaPredicted RBP12.03□□□□□ -0.48
VPS28-216ENST00000533806 TACR1P25103 407 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 CYB561P49447 251 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 ERVK-8P63133 956 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 ZNF763Q0D2J5 394 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 ZNF267Q14586 743 aaPredicted RBP12.03□□□□□ -0.48
VPS28-216ENST00000533806 HEPACAMQ14CZ8 416 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 CHI3L2Q15782 390 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 IMPG1Q17R60 797 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 MPEG1Q2M385 716 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 RFTN2Q52LD8 501 aaPredicted RBP12.03□□□□□ -0.48
VPS28-216ENST00000533806 PIGGQ5H8A4 983 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 SH2D4BQ5SQS7 431 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 SLC25A25Q6KCM7 469 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 LYPD8Q6UX82 237 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 CLEC18BQ6UXF7 455 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 ZNF441Q8N8Z8 693 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 CLEC18CQ8NCF0 446 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 OR5L2Q8NGL0 311 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 TWIST2Q8WVJ9 160 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 SREK1Q8WXA9 508 aaKnown RBP12.03□□□□□ -0.48
VPS28-216ENST00000533806 RASL10BQ96S79 203 aa12.03□□□□□ -0.48
VPS28-216ENST00000533806 SLX1AQ9BQ83 275 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms