RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 J3QKU1 62 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 OR10H2O60403 315 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 PORP16435 677 aaPredicted RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 BGNP21810 368 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 GRK2P25098 689 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 TRHRP34981 398 aaPredicted RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 GSTM5P46439 218 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 ABCE1P61221 599 aaKnown RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 RNF4P78317 190 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 ZNF267Q14586 743 aaPredicted RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 IGFBP7Q16270 282 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 HHATQ5VTY9 493 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 RPUSD3Q6P087 351 aaKnown RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 CISD2Q8N5K1 135 aaKnown RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 CPT1CQ8TCG5 803 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 SNRNP40Q96DI7 357 aaKnown RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 FBXL20Q96IG2 436 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 PAIP2Q9BPZ3 127 aaKnown RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 UTP23Q9BRU9 249 aaKnown RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 TRIM4Q9C037 500 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 TRIM45Q9H8W5 580 aaPredicted RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 LIN28AQ9H9Z2 209 aaKnown RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 CXorf21Q9HAI6 301 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 LRTM1Q9HBL6 345 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 ABI3Q9P2A4 366 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 WBP11Q9Y2W2 641 aaKnown RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 POLR3HQ9Y535 204 aaPredicted RBP18.46■□□□□ 0.55
CPSF1-209ENST00000532725 SPENQ96T58 3664 aaKnown RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 PIP5K1BO14986 540 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 LSM1O15116 133 aaKnown RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 DYRK3O43781 588 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 ERAL1O75616 437 aaKnown RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 HSPA4LO95757 839 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 NEFHP12036 1026 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 CSNK2A2P19784 350 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 FEN1P39748 380 aaKnown RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 ALDH9A1P49189 494 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 FOXK1P85037 733 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 HEPACAMQ14CZ8 416 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 RFTN2Q52LD8 501 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 PRR30Q53SZ7 412 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 SPINK14Q6IE38 97 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 FAM71E1Q6IPT2 247 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 C16orf47Q6ZP98 133 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 MDS2Q8NDY4 140 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 MIB2Q96AX9 1013 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 C19orf60Q96EN9 201 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 CNRIP1Q96F85 164 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 ART5Q96L15 291 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 FCRL1Q96LA6 429 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 SIGLEC12Q96PQ1 595 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 SORT1Q99523 831 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 BARD1Q99728 777 aaKnown RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 ANKRD10Q9NXR5 420 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 MYOTQ9UBF9 498 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 UTS2RQ9UKP6 389 aa18.45■□□□□ 0.54
CPSF1-209ENST00000532725 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 RP1L1Q8IWN7 2480 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-209ENST00000532725 PYCARD-AS1I3L0S3 204 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 ITGA10O75578 1167 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 CLPSP04118 112 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 CT62P0C5K7 136 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 S1PR1P21453 382 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 SLC1A6P48664 564 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 ERVK-8P63133 956 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 DUSP2Q05923 314 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 ZNF763Q0D2J5 394 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 C2orf80Q0P641 193 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 MGAT2Q10469 447 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 FUT7Q11130 342 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 STX3Q13277 289 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 OR1C1Q15619 314 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 FAM180BQ6P0A1 224 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 ZNF227Q86WZ6 799 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 DDIASQ8IXT1 998 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 OR5L2Q8NGL0 311 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 KLHL29Q96CT2 875 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 C3orf30Q96M34 536 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 SH3GL2Q99962 352 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 CNPPD1Q9BV87 410 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 VIPAS39Q9H9C1 493 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 MYNNQ9NPC7 610 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 EHD3Q9NZN3 535 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 COPS7AQ9UBW8 275 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 EXO1Q9UQ84 846 aaKnown RBP18.44■□□□□ 0.54
CPSF1-209ENST00000532725 ERVK-19Q9WJR5 959 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 NTNG1Q9Y2I2 539 aa18.44■□□□□ 0.54
CPSF1-209ENST00000532725 YARS2Q9Y2Z4 477 aaKnown RBP18.44■□□□□ 0.54
CPSF1-209ENST00000532725 FCHO1O14526 889 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 PRAMEF2O60811 474 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 OR2J2O76002 312 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 NEURL1O76050 574 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 SNUPNO95149 360 aaKnown RBP18.43■□□□□ 0.54
CPSF1-209ENST00000532725 ATP1B1P05026 303 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 DDCP20711 480 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 TACR1P25103 407 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 SOX18P35713 384 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 CYB561P49447 251 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 HLCSP50747 726 aa18.43■□□□□ 0.54
CPSF1-209ENST00000532725 HK2P52789 917 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms