RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PEX1O43933 1283 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 NME6O75414 186 aaPredicted RBP9.85□□□□□ -0.83
CD44-227ENST00000528086 CRYABP02511 175 aaKnown RBP9.85□□□□□ -0.83
CD44-227ENST00000528086 SLC35E2P0CK97 266 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 CCL3P10147 92 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 TNNI3P19429 210 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 SERPINB3P29508 390 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 CRHR1P34998 444 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 CA7P43166 264 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 SSR4P51571 173 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 ADORA2A-AS1P86434 159 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 HMGCS1Q01581 520 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 FUT7Q11130 342 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 ASPHQ12797 758 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 IFT88Q13099 833 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 ZNF267Q14586 743 aaPredicted RBP9.85□□□□□ -0.83
CD44-227ENST00000528086 EBPQ15125 230 aaKnown RBP9.85□□□□□ -0.83
CD44-227ENST00000528086 CES4AQ5XG92 561 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 DESI1Q6ICB0 168 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 FAM111BQ6SJ93 734 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 CYP20A1Q6UW02 462 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 IL20RBQ6UXL0 311 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 TMEM64Q6YI46 380 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 FJX1Q86VR8 437 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 C4orf33Q8N1A6 199 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 TMEM178AQ8NBL3 297 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 PSD4Q8NDX1 1056 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 OR52N2Q8NGI0 321 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 SUN3Q8TAQ9 357 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 NUBPLQ8TB37 319 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.85□□□□□ -0.83
CD44-227ENST00000528086 ADIPOR1Q96A54 375 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 CNRIP1Q96F85 164 aaPredicted RBP9.85□□□□□ -0.83
CD44-227ENST00000528086 C5orf34Q96MH7 638 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 DGAT2Q96PD7 388 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 ELOVL6Q9H5J4 265 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 BRF2Q9HAW0 419 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 PLSCR2Q9NRY7 297 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.85□□□□□ -0.83
CD44-227ENST00000528086 DCDC2Q9UHG0 476 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 ZNF639Q9UID6 485 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 TINAGQ9UJW2 476 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 PCDHA9Q9Y5H5 950 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 PTGDR2Q9Y5Y4 395 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 V9GYY5 206 aaPredicted RBP9.85□□□□□ -0.83
CD44-227ENST00000528086 PHF3Q92576 2039 aaKnown RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 SERTM1A2A2V5 107 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 FCHO1O14526 889 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 GLRA3O75311 464 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 GLSO94925 669 aaPredicted RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 ESRRBO95718 433 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 NUDT17P0C025 328 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 CPMP14384 443 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 GALNSP34059 522 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 ARL1P40616 181 aaPredicted RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 BUD31P41223 144 aaPredicted RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 NAGLUP54802 743 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 PLIN5Q00G26 463 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 ALDH6A1Q02252 535 aaKnown RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 LCP2Q13094 533 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 PCLAFQ15004 111 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 MPEG1Q2M385 716 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 EMC4Q5J8M3 183 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 CCNYL2Q5T2Q4 361 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 C10orf62Q5T681 223 aaPredicted RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 ZNF787Q6DD87 383 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 TTC19Q6DKK2 380 aaPredicted RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 OR52E8Q6IFG1 317 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 SLC48A1Q6P1K1 146 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 FRMD7Q6ZUT3 714 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 TRABD2AQ86V40 505 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 TMEM156Q8N614 296 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 BANPQ8N9N5 519 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 OR2M7Q8NG81 312 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 ITLN2Q8WWU7 325 aaPredicted RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 CTHRC1Q96CG8 243 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 CCDC120Q96HB5 630 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 PHF12Q96QT6 1004 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 CNPPD1Q9BV87 410 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 GATA5Q9BWX5 397 aaPredicted RBP9.84□□□□□ -0.83
CD44-227ENST00000528086 WWTR1Q9GZV5 400 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 ANKRA2Q9H9E1 313 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 OXSMQ9NWU1 459 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 SLC17A7Q9P2U7 560 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 LIPGQ9Y5X9 500 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 SPACA6W5XKT8 324 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 PKDREJQ9NTG1 2253 aa9.84□□□□□ -0.83
CD44-227ENST00000528086 NOTCH2Q04721 2471 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 KIAA1549Q9HCM3 1950 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 LRRC3CA6NJW4 275 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 HS6ST1O60243 411 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 SLC19A2O60779 497 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 CBX7O95931 251 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 CELA3AP09093 270 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 KRT4P19013 534 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 TAC1P20366 129 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 GRNP28799 593 aaKnown RBP9.83□□□□□ -0.84
CD44-227ENST00000528086 TLX1P31314 330 aaPredicted RBP9.83□□□□□ -0.84
CD44-227ENST00000528086 PIGAP37287 484 aa9.83□□□□□ -0.84
CD44-227ENST00000528086 FEN1P39748 380 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms