RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 TP53BP1Q12888 1972 aaPredicted RBP3.31□□□□□ -1.88
CD44-215ENST00000525241 A0A1W2PQ72 361 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 YJEFN3A6XGL0 299 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 RNF212BA8MTL3 300 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 MEI4A8MW99 385 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 TSPAN2O60636 221 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 GMNNO75496 209 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 GOSR1O95249 250 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 MMP10P09238 476 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 MATKP42679 507 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 ALDH3B1P43353 468 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 NOVP48745 357 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 HERV-K104P63124 156 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 ANKRD55Q3KP44 614 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 UNC50Q53HI1 259 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 RHBDD2Q6NTF9 364 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 BEST4Q8NFU0 473 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 OR4A16Q8NH70 328 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 ZPLD1Q8TCW7 415 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 ST7LQ8TDW4 575 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 JPH2Q9BR39 696 aaPredicted RBP3.31□□□□□ -1.88
CD44-215ENST00000525241 DCLRE1BQ9H816 532 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 IL1RL2Q9HB29 575 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 ACOXLQ9NUZ1 547 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 FAM120CQ9NX05 1096 aaKnown RBP3.31□□□□□ -1.88
CD44-215ENST00000525241 DHRS4-AS1Q9P1J3 65 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 DIMT1Q9UNQ2 313 aaKnown RBP3.31□□□□□ -1.88
CD44-215ENST00000525241 FER1L5A0AVI2 2057 aa3.31□□□□□ -1.88
CD44-215ENST00000525241 KIF7Q2M1P5 1343 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 IGLV3-10A0A075B6K4 115 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 KRTAP9-6A8MVA2 160 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 SLC28A1O00337 649 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 ZNF253O75346 499 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 KBTBD11O94819 623 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 FCGR3AP08637 254 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 FCARP24071 287 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 SLC12A3P55017 1021 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 Q1RN00 199 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 LINC00242Q5T6M2 205 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 VITQ6UXI7 678 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 B3GLCTQ6Y288 498 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 RHOXF1Q8NHV9 184 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 FBXO25Q8TCJ0 367 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 PRAM1Q96QH2 718 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 APOL2Q9BQE5 337 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 TTYH2Q9BSA4 534 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 ST6GALNAC5Q9BVH7 336 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 FUNDC2Q9BWH2 189 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 Q9HAA7 133 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 ARMCX1Q9P291 453 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 EIF3KQ9UBQ5 218 aaKnown RBP3.3□□□□□ -1.88
CD44-215ENST00000525241 MLXQ9UH92 298 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 TP53TG3Q9ULZ0 132 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 SLC6A5Q9Y345 797 aa3.3□□□□□ -1.88
CD44-215ENST00000525241 HCFC1P51610 2035 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 POGZQ7Z3K3 1410 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 MCF2LO15068 1137 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 SRPX2O60687 465 aaPredicted RBP3.29□□□□□ -1.88
CD44-215ENST00000525241 KINO60870 393 aaKnown RBP3.29□□□□□ -1.88
CD44-215ENST00000525241 FCER2P06734 321 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 MBL2P11226 248 aaPredicted RBP3.29□□□□□ -1.88
CD44-215ENST00000525241 UGT1A6P19224 532 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 GEMP55040 296 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 ABRAXAS2Q15018 415 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 KRT31Q15323 416 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 TRADDQ15628 312 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 LTB4RQ15722 352 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 RTL6Q6ICC9 239 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 STEAP1BQ6NZ63 245 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 BAIAP2L2Q6UXY1 529 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 GPR142Q7Z601 462 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 ADCK1Q86TW2 530 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 SERINC5Q86VE9 423 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 HSCBQ8IWL3 235 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 UNC45BQ8IWX7 931 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 COG3Q96JB2 828 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 RPGRIP1Q96KN7 1286 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 GPR137Q96N19 417 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 RANBP9Q96S59 729 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 ZBP1Q9H171 429 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 RCOR3Q9P2K3 495 aaPredicted RBP3.29□□□□□ -1.88
CD44-215ENST00000525241 MRPS2Q9Y399 296 aaKnown RBP3.29□□□□□ -1.88
CD44-215ENST00000525241 ATG4BQ9Y4P1 393 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 SNX5Q9Y5X3 404 aa3.29□□□□□ -1.88
CD44-215ENST00000525241 FAM205AQ6ZU69 1335 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 TRAV9-2A0A087WT02 112 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 ZNF487B1APH4 448 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 REC8O95072 547 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 PIGRP01833 764 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 THY1P04216 161 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 SFTPBP07988 381 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 SERPINF2P08697 491 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 FERP16591 822 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 PPP2R1BP30154 601 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 TRIM23P36406 574 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 BRCC3P46736 316 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 RPL34P49207 117 aaKnown RBP3.28□□□□□ -1.88
CD44-215ENST00000525241 GSTO1P78417 241 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 CDKL1Q00532 357 aa3.28□□□□□ -1.88
CD44-215ENST00000525241 KLF5Q13887 457 aaPredicted RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms