RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 USF2Q15853 346 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 CYP1B1Q16678 543 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF829Q3KNS6 432 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 DUPD1Q68J44 220 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 GPR155Q7Z3F1 870 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 CLNKQ7Z7G1 428 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 MCATQ8IVS2 390 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 NLGN4XQ8N0W4 816 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 FBXO15Q8NCQ5 510 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 NLGN4YQ8NFZ3 816 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 OR5T3Q8NGG3 340 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 OR9A1PQ8NGU1 263 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 CAVIN3Q969G5 261 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 ARL5BQ96KC2 179 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 BBC3Q96PG8 261 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 ACTL8Q9H568 366 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 RANBP3Q9H6Z4 567 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SEMA4BQ9NPR2 832 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 PDE10AQ9Y233 779 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 TEX264Q9Y6I9 313 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 TP53BP1Q12888 1972 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC5A10A0PJK1 596 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 TO15178 435 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 BPNT1O95861 308 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SELLP14151 372 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 RFX3P48380 749 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 NR1H2P55055 460 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 CDH15P55291 814 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 LIPEQ05469 1076 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 VAC14Q08AM6 782 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SWI5Q1ZZU3 235 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 CDKL4Q5MAI5 379 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 AGBL2Q5U5Z8 902 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 C6orf15Q6UXA7 325 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 PIGWQ7Z7B1 504 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 GLRX5Q86SX6 157 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 LAPTM4BQ86VI4 370 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 C17orf64Q86WR6 236 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 LSMEM2Q8N112 164 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 MMGT1Q8N4V1 131 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 AFAP1L2Q8N4X5 818 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 EFCAB3Q8N7B9 438 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 C19orf47Q8N9M1 422 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 POC5Q8NA72 575 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 NANPQ8TBE9 248 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SDCCAG3Q96C92 435 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 CEP19Q96LK0 163 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 RILPQ96NA2 401 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 ASCL3Q9NQ33 180 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 A0A096LPK6 155 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 TMEM238LA0A1B0GVL6 79 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM187AA6NFU0 413 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 TLCD2A6NGC4 264 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SAC3D1A6NKF1 404 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 NTN3O00634 580 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 ITM2AO43736 263 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 DEAF1O75398 565 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 BCL10O95999 233 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 FURINP09958 794 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SERPINB5P36952 375 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 GPR3P46089 330 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 RNF4P78317 190 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 ALKBH1Q13686 389 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 INTS11Q5TA45 600 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 TMEM207Q6UWW9 146 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 ZDHHC24Q6UX98 284 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SZRD1Q7Z422 152 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 LINC00518Q8N0U6 118 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SIRT6Q8N6T7 355 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 TSPAN14Q8NG11 270 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 DTD1Q8TEA8 209 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 HEXDCQ8WVB3 486 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 PEX11GQ96HA9 241 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 PAFAH2Q99487 392 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 BTBD10Q9BSF8 475 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 EIF2B3Q9NR50 452 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 STX18Q9P2W9 335 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 HEBP2Q9Y5Z4 205 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 CACNA1DQ01668 2161 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 C9J4A7 227 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 TTC4O95801 387 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 TGFB1P01137 390 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM58BPP0C7Q3 252 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 MASP1P48740 699 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PNLIPRP1P54315 467 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SSTP61278 116 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SNRPNP63162 240 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 CLCQ05315 142 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 CLN3Q13286 438 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 NEDD8Q15843 81 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 SFT2D3Q587I9 215 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 XKR6Q5GH73 641 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 PRAMEF13Q5VWM6 474 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 NLRP8Q86W28 1048 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ZC3HC1Q86WB0 502 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 OR4N5Q8IXE1 308 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 POC1BQ8TC44 478 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 TESCQ96BS2 214 aa7.47□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF845Q96IR2 970 aaPredicted RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms