RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 FAM71E2Q8N5Q1 922 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 OR4F6Q8NGB9 312 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 GAB3Q8WWW8 586 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 RAB40AQ8WXH6 277 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 UPRTQ96BW1 309 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC25A44Q96H78 314 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 BTBD2Q9BX70 525 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ARHGAP39Q9C0H5 1083 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ADAM19Q9H013 955 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 C8orf33Q9H7E9 229 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 RNF181Q9P0P0 153 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 FBXW11Q9UKB1 542 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ASB3Q9Y575 518 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 NOX1Q9Y5S8 564 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SHROOM2Q13796 1616 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 CLN5O75503 358 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 MBP02144 154 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 AKR1C4P17516 323 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 PRKACGP22612 351 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 FABP6P51161 128 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 CRYBB1P53674 252 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 PLA2G16P53816 162 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SELENOVP59797 346 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 FKBP1AP62942 108 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 BAK1Q16611 211 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ACTBL2Q562R1 376 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 PRAMEF14Q5SWL7 426 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 FAM111BQ6SJ93 734 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ASRGL1Q7L266 308 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 OR6N1Q8NGY5 312 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 OR2T11Q8NH01 316 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ST7LQ8TDW4 575 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 OR1E3Q8WZA6 343 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 RBPMSQ93062 196 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC25A36Q96CQ1 311 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 GAL3ST4Q96RP7 486 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC2A11Q9BYW1 496 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 DTLQ9NZJ0 730 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 FKBPLQ9UIM3 349 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 RNF215Q9Y6U7 377 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ANGPTL7O43827 346 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 GNB3P16520 340 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNC1P48547 511 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF84P51523 738 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 PLP2Q04941 152 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 CRYZQ08257 329 aaKnown RBP10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 GPR68Q15743 365 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 SPANXN4Q5MJ08 99 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 GPC2Q8N158 579 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 BRIX1Q8TDN6 353 aaKnown RBP10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 TRIB2Q92519 343 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 UHRF2Q96PU4 802 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 MTERF1Q99551 399 aaKnown RBP10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 POLDIP3Q9BY77 421 aaKnown RBP10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 LHPPQ9H008 270 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 NTN4Q9HB63 628 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 PARPBPQ9NWS1 579 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNIP1Q9NZI2 227 aa10.77□□□□□ -0.68
LIMCH1-217ENST00000512946 J3KR12 359 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 M0R2N6 131 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 OPN1SWP03999 348 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 PIM1P11309 404 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 G6PDP11413 515 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 HRH2P25021 359 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 MAP4K2Q12851 820 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 PCLAFQ15004 111 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 DUSP6Q16828 381 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 CELF3Q5SZQ8 465 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 C9orf57Q5W0N0 161 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 PAQR3Q6TCH7 311 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 NLRP8Q86W28 1048 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 ZDHHC14Q8IZN3 488 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC30A7Q8NEW0 376 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 OR6N2Q8NGY6 317 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 RHEBL1Q8TAI7 183 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 TRMT10AQ8TBZ6 339 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 ZDHHC1Q8WTX9 485 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 CDK15Q96Q40 435 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 SEC61A2Q9H9S3 476 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 EMC7Q9NPA0 242 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 INPP5EQ9NRR6 644 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 PCDHGA2Q9Y5H1 932 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 ZFYVE16Q7Z3T8 1539 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 RNF4P78317 190 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 OPCMLQ14982 345 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 TCEAL1Q15170 157 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 MINDY4Q4G0A6 757 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 COL13A1Q5TAT6 717 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 CNIH2Q6PI25 160 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC29A4Q7RTT9 530 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 DCUN1D3Q8IWE4 304 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 TEX26Q8N6G2 289 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 DCBLD1Q8N8Z6 715 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 PLPP5Q8NEB5 264 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 C2orf15Q8WU43 125 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 CHAC2Q8WUX2 184 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 THAP7Q9BT49 309 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 IL17RBQ9NRM6 502 aa10.77□□□□□ -0.69
LIMCH1-217ENST00000512946 CPS1P31327 1500 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms