RNA–Protein interactions for RNA: ENST00000504807.5

DDX41-204, Transcript of DEAD-box helicase 41, humanhuman

TSL 2

Gene DDX41, Length 794 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-204ENST00000504807 RFPL3SP0C7P2 107 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 FAM58BPP0C7Q3 252 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 ENDOUP21128 410 aaKnown RBP12.12□□□□□ -0.47
DDX41-204ENST00000504807 PTGS2P35354 604 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 MAGEA5P43359 124 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 RAP1GDS1P52306 607 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 PPIAP62937 165 aaKnown RBP12.12□□□□□ -0.47
DDX41-204ENST00000504807 DUSP2Q05923 314 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 TGM3Q08188 693 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 SERTAD2Q14140 314 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 WHAMMP3Q1A5X7 153 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 PIGGQ5H8A4 983 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 TMEM251Q8N6I4 163 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 POGLUT1Q8NBL1 392 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 ACBD4Q8NC06 268 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 SIMC1Q8NDZ2 872 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 SRFBP1Q8NEF9 429 aaKnown RBP12.12□□□□□ -0.47
DDX41-204ENST00000504807 IFT81Q8WYA0 676 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 UBE2E3Q969T4 207 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 MRPL1Q9BYD6 325 aaKnown RBP12.12□□□□□ -0.47
DDX41-204ENST00000504807 ZDHHC11Q9H8X9 412 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 TIMMDC1Q9NPL8 285 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 PNPLA3Q9NST1 481 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 ANGPTL3Q9Y5C1 460 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 CACNA1CQ13936 2221 aa12.12□□□□□ -0.47
DDX41-204ENST00000504807 LRRC3CA6NJW4 275 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 E9PLN8 166 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 RPS17P08708 135 aaKnown RBP12.11□□□□□ -0.47
DDX41-204ENST00000504807 ALOX15P16050 662 aaPredicted RBP12.11□□□□□ -0.47
DDX41-204ENST00000504807 SERPINB1P30740 379 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 SSTR4P31391 388 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 HPDP32754 393 aaPredicted RBP12.11□□□□□ -0.47
DDX41-204ENST00000504807 SLC37A1P57057 533 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 HERVK_113P63132 956 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 ERVK-8P63133 956 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 DUSP8Q13202 625 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 CUL3Q13618 768 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 EBPQ15125 230 aaKnown RBP12.11□□□□□ -0.47
DDX41-204ENST00000504807 TCHHL1Q5QJ38 904 aaPredicted RBP12.11□□□□□ -0.47
DDX41-204ENST00000504807 RTL6Q6ICC9 239 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 LETMD1Q6P1Q0 360 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 OR8K3Q8NH51 312 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 PHF10Q8WUB8 498 aaKnown RBP12.11□□□□□ -0.47
DDX41-204ENST00000504807 NUDT8Q8WV74 236 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 ZNF592Q92610 1267 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 FBXL20Q96IG2 436 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 DGAT2Q96PD7 388 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 TREX2Q9BQ50 279 aaPredicted RBP12.11□□□□□ -0.47
DDX41-204ENST00000504807 VKORC1Q9BQB6 163 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 ERVK-6Q9BXR3 956 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 UCK2Q9BZX2 261 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 PPT2Q9UMR5 302 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 ERVK-19Q9WJR5 959 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 PCDHGA11Q9Y5H2 935 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 FAM215AQ9Y5M1 114 aa12.11□□□□□ -0.47
DDX41-204ENST00000504807 AKAP6Q13023 2319 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 NKX2-6A6NCS4 301 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 FOXO6A8MYZ6 492 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 KDM4EB2RXH2 506 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 TRIM49D1C9J1S8 452 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 POC1B-GALNT4F8VUJ3 575 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 FOXE1O00358 373 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 PRRG2O14669 202 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 UGDHO60701 494 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 CLDN9O95484 217 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 CNR1P21554 472 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 PTX3P26022 381 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 CDH13P55290 713 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 GALNT1Q10472 559 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 RCN2Q14257 317 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 ZNF267Q14586 743 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 SPRED3Q2MJR0 410 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 PRAMEF20Q5VT98 475 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 BICRALQ6AI39 1079 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 DESI1Q6ICB0 168 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 FAM180BQ6P0A1 224 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 RTL4Q6ZR62 310 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 CEP128Q6ZU80 1094 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 CCDC71Q8IV32 467 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 GPALPP1Q8IXQ4 340 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 ZNF441Q8N8Z8 693 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 OR4F6Q8NGB9 312 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 OR10G3Q8NGC4 313 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 OR5M9Q8NGP3 310 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 NUBPLQ8TB37 319 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 ZNF483Q8TF39 744 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 SDCCAG3Q96C92 435 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 HBEGFQ99075 208 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 FMO2Q99518 471 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 CNPPD1Q9BV87 410 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 EPB41L4BQ9H329 900 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 NPDC1Q9NQX5 325 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 SPRR3Q9UBC9 169 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 DTX4Q9Y2E6 619 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 CHCHD2Q9Y6H1 151 aaPredicted RBP12.1□□□□□ -0.47
DDX41-204ENST00000504807 GTF3C1Q12789 2109 aa12.1□□□□□ -0.47
DDX41-204ENST00000504807 A8MT66 165 aa12.09□□□□□ -0.47
DDX41-204ENST00000504807 NPIPA2E9PIF3 369 aa12.09□□□□□ -0.47
DDX41-204ENST00000504807 NPIPA3F8WFD2 350 aa12.09□□□□□ -0.47
DDX41-204ENST00000504807 STX16-NPEPL1H3BU86 382 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms