RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 IKZF3Q9UKT9 509 aa13□□□□□ -0.33
PRPF40A-211ENST00000493468 SLC6A5Q9Y345 797 aa13□□□□□ -0.33
PRPF40A-211ENST00000493468 ANK2Q01484 3957 aa13□□□□□ -0.33
PRPF40A-211ENST00000493468 OR6C76A6NM76 312 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 CAPN14A8MX76 684 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 A8MXE2 369 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 FGF17O60258 216 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 TMCC2O75069 709 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 LRATO95237 230 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 ACSL3O95573 720 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 IFNA2P01563 188 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 FGGP02679 453 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 AHSGP02765 367 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 CPN1P15169 458 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 CRYGSP22914 178 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 SLCO1A2P46721 670 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 VPS41P49754 854 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 PLIN5Q00G26 463 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 ID2Q02363 134 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 GAB1Q13480 694 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 CRYMQ14894 314 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 EBPQ15125 230 aaKnown RBP12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 TRIP13Q15645 432 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 SPRED3Q2MJR0 410 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 HEPHL1Q6MZM0 1159 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 ZNF793Q6ZN11 406 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 PACS2Q86VP3 889 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 TAGAPQ8N103 731 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 ZNF441Q8N8Z8 693 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 BBOF1Q8ND07 529 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 IGFBPL1Q8WX77 278 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 TMEM158Q8WZ71 300 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 WNT2BQ93097 391 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 RILPQ96NA2 401 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 GAL3ST4Q96RP7 486 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 MAPKAP1Q9BPZ7 522 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 TBCDQ9BTW9 1192 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 ANGPTL4Q9BY76 406 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 PACSIN3Q9UKS6 424 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 OARD1Q9Y530 152 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 ABCA1O95477 2261 aa12.99□□□□□ -0.33
PRPF40A-211ENST00000493468 ROS1P08922 2347 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 GOLGA8MH3BSY2 632 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 HRKO00198 91 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 WDR47O94967 919 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 ZNF37AP17032 561 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 PGAM1P18669 254 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 ATP5A1P25705 553 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 SOX18P35713 384 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 SLC37A1P57057 533 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 DMTNQ08495 405 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 EIPR1Q53HC9 387 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 FAM45BPQ6NSW5 357 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 HMBOX1Q6NT76 420 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 RNF111Q6ZNA4 994 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 TMEM139Q8IV31 216 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 MEIOBQ8N635 442 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 ACOT4Q8N9L9 421 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 FAM45AQ8TCE6 357 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 SPPL2AQ8TCT8 520 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 WDR34Q96EX3 536 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 RBM18Q96H35 190 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 TMEM41AQ96HV5 264 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 GNRHR2Q96P88 292 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 F2RL3Q96RI0 385 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 BAG1Q99933 345 aaPredicted RBP12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 EGFL8Q99944 293 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 TUBA1CQ9BQE3 449 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 PELOQ9BRX2 385 aaKnown RBP12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 DESI2Q9BSY9 194 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 VWA7Q9Y334 891 aa12.98□□□□□ -0.33
PRPF40A-211ENST00000493468 USF3Q68DE3 2245 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 CR1P17927 2039 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 IQANK1A0A1B0GTG1 560 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 MSTNO14793 375 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 CDH16O75309 829 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 SOX30O94993 753 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 TTC4O95801 387 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 F12P00748 615 aaPredicted RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 KRT14P02533 472 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 HIST1H1TP22492 207 aaPredicted RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 CHMP24386 653 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 GCKP35557 465 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 MASP1P48740 699 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 TMED10P49755 219 aaKnown RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 NAGLUP54802 743 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 RPP38P78345 283 aaKnown RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 KCTD19Q17RG1 926 aaPredicted RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 WIPI1Q5MNZ9 446 aaPredicted RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 ADNP2Q6IQ32 1131 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 DGAT2L6Q6ZPD8 337 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 UBE3DQ7Z6J8 389 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 ST13P4Q8IZP2 240 aaPredicted RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 SLC44A1Q8WWI5 657 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 UCN3Q969E3 161 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 TP53INP1Q96A56 240 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 INTS12Q96CB8 462 aaKnown RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 PIK3IP1Q96FE7 263 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 MARK4Q96L34 752 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 WFIKKN1Q96NZ8 548 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms