RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 THAP3Q8WTV1 239 aaPredicted RBP15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 RIT1Q92963 219 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 SENP5Q96HI0 755 aaPredicted RBP15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 FBXL20Q96IG2 436 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 CNPPD1Q9BV87 410 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 C20orf27Q9GZN8 174 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 ZNF395Q9H8N7 513 aaPredicted RBP15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 MYNNQ9NPC7 610 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 UTS2RQ9UKP6 389 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 RAP2CQ9Y3L5 183 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 ZNF780BQ9Y6R6 833 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 BOD1L1Q8NFC6 3051 aa15.15■□□□□ 0.02
MSH5-SAPCD1-206ENST00000491552 TLN1Q9Y490 2541 aaKnown RBP15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TRAV17A0A0B4J275 112 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TTLL8A6PVC2 850 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 CDK2AP1O14519 115 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 PRKNO60260 465 aaPredicted RBP15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 IGKV3-11P04433 115 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 PLA2G2AP14555 144 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 CSNK2A2P19784 350 aaPredicted RBP15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TNFSF10P50591 281 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ERVK-8P63133 956 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 RPL38P63173 70 aaKnown RBP15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TLE1Q04724 770 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 BST1Q10588 318 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TUBA3CQ13748 450 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ZNF267Q14586 743 aaPredicted RBP15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 GALNTL6Q49A17 601 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 XKR7Q5GH72 579 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 C6orf163Q5TEZ5 329 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TUBA3EQ6PEY2 450 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 GALNT12Q8IXK2 581 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 KIRREL3Q8IZU9 778 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 OR8K3Q8NH51 312 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 SUN3Q8TAQ9 357 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 DOK4Q8TEW6 326 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 FCRL1Q96LA6 429 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 PPP3R2Q96LZ3 170 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 SORT1Q99523 831 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 CCT7Q99832 543 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 UTP23Q9BRU9 249 aaKnown RBP15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 PFDN4Q9NQP4 134 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 EHD3Q9NZN3 535 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ERVK-19Q9WJR5 959 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TMED5Q9Y3A6 229 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 PCDHGA10Q9Y5H3 936 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 KALRNO60229 2985 aa15.14■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 HRKO00198 91 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 DDCP20711 480 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 NT5EP21589 574 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 FEN1P39748 380 aaKnown RBP15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ST13P50502 369 aaKnown RBP15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 MLLT10P55197 1068 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 RNF4P78317 190 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 C2orf80Q0P641 193 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 RFTN2Q52LD8 501 aaPredicted RBP15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 FAM71E1Q6IPT2 247 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 IKBIPQ70UQ0 350 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TRIM42Q8IWZ5 723 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 LRRC25Q8N386 305 aaPredicted RBP15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 RAB3IL1Q8TBN0 382 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 EXOSC8Q96B26 276 aaKnown RBP15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 C19orf60Q96EN9 201 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 CNRIP1Q96F85 164 aaPredicted RBP15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 C3orf30Q96M34 536 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TRIM4Q9C037 500 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 CXorf21Q9HAI6 301 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ANKRD10Q9NXR5 420 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 HAO1Q9UJM8 370 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ENTPD4Q9Y227 616 aa15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 WBP11Q9Y2W2 641 aaKnown RBP15.13■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TMEM200CA6NKL6 621 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 HMGB1P1B2RPK0 211 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ITGA10O75578 1167 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 SASH3O75995 380 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ATP1B1P05026 303 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 CT62P0C5K7 136 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 SDC1P18827 310 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TACR1P25103 407 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 TRHRP34981 398 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 CD96P40200 585 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 RPL14P50914 215 aaKnown RBP15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 HK2P52789 917 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 OC90Q02509 493 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 DUSP2Q05923 314 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 PDCD2Q16342 344 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ATP6AP1LQ52LC2 224 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ATG16L1Q676U5 607 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 FAM180BQ6P0A1 224 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 RNF111Q6ZNA4 994 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 C9orf40Q8IXQ3 194 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 SAMD14Q8IZD0 417 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 OR5L2Q8NGL0 311 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 CPT1CQ8TCG5 803 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 ZNF681Q96N22 645 aa15.12■□□□□ 0.01
MSH5-SAPCD1-206ENST00000491552 LIN28AQ9H9Z2 209 aaKnown RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms