RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CTSBP07858 339 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ETFAP13804 333 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 KDELR2P33947 212 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 CRATP43155 626 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 GABRA4P48169 554 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ARL4DP49703 201 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 CDK9P50750 372 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 HSD11B2P80365 405 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 HSPB3Q12988 150 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 KCNAB1Q14722 419 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 DEFB134Q4QY38 66 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ZC3H12BQ5HYM0 836 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 GCNT6Q5T4J0 391 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 SWT1Q5T5J6 900 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 ANGPTL8Q6UXH0 198 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ARHGAP22Q7Z5H3 698 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 B3GNT8Q7Z7M8 397 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 RNF130Q86XS8 419 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 DNAJC22Q8N4W6 341 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 CNRIP1Q96F85 164 aaPredicted RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 SLC47A1Q96FL8 570 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 SLC41A2Q96JW4 573 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ASPSCR1Q9BZE9 553 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 GLIPR2Q9H4G4 154 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ZNF768Q9H5H4 540 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 YY1AP1Q9H869 796 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 LYRM4Q9HD34 91 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 FAF1Q9UNN5 650 aaPredicted RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 SAMD4AQ9UPU9 718 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 SLC22A7Q9Y694 548 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 CNOT1A5YKK6 2376 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 GLOD5A6NK44 160 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 WASHC1A8K0Z3 465 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 AGRPO00253 132 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 PRSS23O95084 383 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 LDLRP01130 860 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 EIF2S1P05198 315 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 ANKRD34CP0C6C1 535 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ZNF26P17031 533 aaPredicted RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 NELFEP18615 380 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 BUD31P41223 144 aaPredicted RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 PDX1P52945 283 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 VSX2P58304 361 aaPredicted RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 EEF1A2Q05639 463 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 ILKQ13418 452 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 PHF19Q5T6S3 580 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 INTS11Q5TA45 600 aaKnown RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 TLDC1Q6P9B6 456 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 GLRX5Q86SX6 157 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 KMT5CQ86Y97 462 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 D2HGDHQ8N465 521 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ARHGEF39Q8N4T4 335 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ICA1LQ8NDH6 482 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 SUN3Q8TAQ9 357 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 PYURFQ96I23 114 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 C10orf90Q96M02 699 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ZNF681Q96N22 645 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 BBS4Q96RK4 519 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 CHRNA10Q9GZZ6 450 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 VCXQ9H320 206 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 MS4A12Q9NXJ0 267 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 RPS6KA6Q9UK32 745 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 DAPP1Q9UN19 280 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 ENTPD4Q9Y227 616 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 SNX8Q9Y5X2 465 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 FAM149AA5PLN7 773 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 TXNDC9O14530 226 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 SRPX2O60687 465 aaPredicted RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 GALR3O60755 368 aaPredicted RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 B4GALT2O60909 372 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 DEAF1O75398 565 aaPredicted RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 ERAL1O75616 437 aaKnown RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 MT-ND1P03886 318 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 ARAFP10398 606 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 CSNK2A2P19784 350 aaPredicted RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 LIM2P55344 173 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 RUNX2Q13950 521 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 COL9A2Q14055 689 aaPredicted RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 ZNF630Q2M218 657 aaPredicted RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 PRTGQ2VWP7 1150 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 LRRC23Q53EV4 343 aaPredicted RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 OR52E8Q6IFG1 317 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 TMEM64Q6YI46 380 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 EPHX4Q8IUS5 362 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 MCATQ8IVS2 390 aaKnown RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 PACRGLQ8N7B6 248 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 SFXN5Q8TD22 340 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 MAL2Q969L2 176 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 ZNF285Q96NJ3 590 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 CIB1Q99828 191 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 TMEM121BQ9BXQ6 578 aaPredicted RBP13.36□□□□□ -0.27
CUX1-209ENST00000487284 COQ10BQ9H8M1 238 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 GIMAP4Q9NUV9 329 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 PLCL2Q9UPR0 1127 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 MAP4K5Q9Y4K4 846 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 CFAP54Q96N23 3096 aa13.36□□□□□ -0.27
CUX1-209ENST00000487284 KIF26BQ2KJY2 2108 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 CLOCKO15516 846 aa13.35□□□□□ -0.27
CUX1-209ENST00000487284 GCM2O75603 506 aaPredicted RBP13.35□□□□□ -0.27
CUX1-209ENST00000487284 FOLR1P15328 257 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms