RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 H7C0S8 307 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 CIAO1O76071 339 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 MMP1P03956 469 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 APOA4P06727 396 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 RPSAP08865 295 aaKnown RBP4.95□□□□□ -1.62
USP40-213ENST00000483216 NUDT17P0C025 328 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 TROVE2P10155 538 aaKnown RBP eCLIP4.95□□□□□ -1.62
USP40-213ENST00000483216 HSPD1P10809 573 aaKnown RBP4.95□□□□□ -1.62
USP40-213ENST00000483216 AADACP22760 399 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 MARCKSP29966 332 aaPredicted RBP4.95□□□□□ -1.62
USP40-213ENST00000483216 MAGEA1P43355 309 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 CD151P48509 253 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 CCNHP51946 323 aaPredicted RBP4.95□□□□□ -1.62
USP40-213ENST00000483216 OR1D5P58170 312 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 XIAPP98170 497 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 CAV1Q03135 178 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 SULT2A1Q06520 285 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 LY6DQ14210 128 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 GCKRQ14397 625 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 KRT31Q15323 416 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 HHATQ5VTY9 493 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 COPS6Q7L5N1 327 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 CHMP1BQ7LBR1 199 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 SLFN11Q7Z7L1 901 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 Q8NFD4 153 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 OR4D10Q8NGI6 311 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 ACTRT1Q8TDG2 376 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 MAIP1Q8WWC4 291 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 IFT81Q8WYA0 676 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 RSPH1Q8WYR4 309 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 STMN2Q93045 179 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 RBM41Q96IZ5 413 aaKnown RBP4.95□□□□□ -1.62
USP40-213ENST00000483216 PRICKLE1Q96MT3 831 aaPredicted RBP4.95□□□□□ -1.62
USP40-213ENST00000483216 AGAP4Q96P64 663 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 ERGIC2Q96RQ1 377 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 PYGO2Q9BRQ0 406 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 PI4K2AQ9BTU6 479 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 TMEM109Q9BVC6 243 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 RAB34Q9BZG1 259 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 RIMS4Q9H426 269 aaPredicted RBP4.95□□□□□ -1.62
USP40-213ENST00000483216 B3GAT2Q9NPZ5 323 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 FGFR1OP2Q9NVK5 253 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 SENP1Q9P0U3 644 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 ATXN10Q9UBB4 475 aa4.95□□□□□ -1.62
USP40-213ENST00000483216 NUP188Q5SRE5 1749 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 SHANK3Q9BYB0 1731 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 NID2Q14112 1375 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 KCPQ6ZWJ8 1503 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 TSPY2A6NKD2 308 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ERI2A8K979 691 aaKnown RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 A8MXQ7 604 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 F8VVB4 439 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 F8VWA3 439 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 PGRMC1O00264 195 aaKnown RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 CETN3O15182 167 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 MAPK13O15264 365 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 RGS16O15492 202 aaPredicted RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 PFDN1O60925 122 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 CTDNEP1O95476 244 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 QDPRP09417 244 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 MYOGP15173 224 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 HPDP32754 393 aaPredicted RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 KRT2P35908 639 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 VHLP40337 213 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 MTIF2P46199 727 aaKnown RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 GMPSP49915 693 aaPredicted RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 NAGLUP54802 743 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 RPS6KA1Q15418 735 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ALX1Q15699 326 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 KRT71Q3SY84 523 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 LRRC73Q5JTD7 316 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ANKRD20A2Q5SQ80 823 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ANKRD20A1Q5TYW2 823 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ANKRD20A3Q5VUR7 823 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 PRSS55Q6UWB4 352 aaPredicted RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 TOM1L2Q6ZVM7 507 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 PIGWQ7Z7B1 504 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ZER1Q7Z7L7 766 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ST13P4Q8IZP2 240 aaPredicted RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 RIBC1Q8N443 379 aaPredicted RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 Q8NBF4 154 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 BBOF1Q8ND07 529 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 SLC26A7Q8TE54 656 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 NELFBQ8WX92 580 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 RAD54LQ92698 747 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 OMA1Q96E52 524 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 PAGE5Q96GU1 130 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 CAPZA3Q96KX2 299 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 CATSPER2Q96P56 530 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 XPO6Q96QU8 1125 aaKnown RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 AP1M1Q9BXS5 423 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 Q9H521 79 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ZWILCHQ9H900 591 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 RNF121Q9H920 327 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 SAMSN1Q9NSI8 373 aaKnown RBP4.94□□□□□ -1.62
USP40-213ENST00000483216 NKIRAS1Q9NYS0 192 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 HACD3Q9P035 362 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 BCAP29Q9UHQ4 241 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 LNPEPQ9UIQ6 1025 aa4.94□□□□□ -1.62
USP40-213ENST00000483216 ANGPTL2Q9UKU9 493 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms