RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KLHL2O95198 593 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ALDOAP04075 364 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 P04436 131 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 COX7A2P14406 83 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ALOX15P16050 662 aaPredicted RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ADH7P40394 386 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DLX5P56178 289 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RPS13P62277 151 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PLIN5Q00G26 463 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TBL3Q12788 808 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NTRK2Q16620 822 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PFKFB4Q16877 469 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 B3GNT6Q6ZMB0 384 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CDH24Q86UP0 819 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 LIX1LQ8IVB5 337 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FBXW8Q8N3Y1 598 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 UCN3Q969E3 161 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ART5Q96L15 291 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FUT8Q9BYC5 575 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ZNF703Q9H7S9 590 aaPredicted RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 QPCTLQ9NXS2 382 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CNIH4Q9P003 139 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SPRR3Q9UBC9 169 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 Q9UFV3 132 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 KCNN3Q9UGI6 736 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CNOT11Q9UKZ1 510 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 IKBKGQ9Y6K9 419 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ATP6AP2A0A1C7CYW4 349 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR6C76A6NM76 312 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FIGNL2A6NMB9 653 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TRIM3O75382 744 aaPredicted RBP11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ATP6AP2O75787 350 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FAM58BPP0C7Q3 252 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC35E2P0CK97 266 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TLX1P31314 330 aaPredicted RBP11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CASQ1P31415 396 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MAGEA12P43365 314 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZFP36L2P47974 494 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MAN2A2P49641 1150 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RIPPLY3P57055 190 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 HERVK_113P63132 956 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ERVK-8P63133 956 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GTF2H2Q13888 395 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLMAPQ14BN4 828 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 EBPQ15125 230 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FAM83EQ2M2I3 478 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 MROH9Q5TGP6 573 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GTF2H2CQ6P1K8 395 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SEM1Q6ZVN7 128 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RELL1Q8IUW5 271 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR10G3Q8NGC4 313 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR5M3Q8NGP4 307 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SLC22A8Q8TCC7 542 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ISL2Q96A47 359 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PELOQ9BRX2 385 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NTMT1Q9BV86 223 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CNPPD1Q9BV87 410 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ERVK-6Q9BXR3 956 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 WWTR1Q9GZV5 400 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RAB17Q9H0T7 212 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CXorf21Q9HAI6 301 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZFP64Q9NPA5 681 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SNX15Q9NRS6 342 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 LYARQ9NX58 379 aaKnown RBP11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ITGB1BP2Q9UKP3 347 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ERVK-19Q9WJR5 959 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RNF11Q9Y3C5 154 aa11.27□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 VPS13CQ709C8 3753 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DOCK7Q96N67 2140 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TRGV5A0A0B4J1U4 118 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 A0A1W2PS29 197 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FAM221AA4D161 298 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FAM90A27PA6NNH2 459 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 OR7A17O14581 309 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PGRMC2O15173 223 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SIX3O95343 332 aaPredicted RBP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 S1PR1P21453 382 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 SOX18P35713 384 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 BUD31P41223 144 aaPredicted RBP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NEK2P51955 445 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RAP1GDS1P52306 607 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ETF1P62495 437 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FUT7Q11130 342 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DDX39BQ13838 428 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZNF267Q14586 743 aaPredicted RBP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CPSF6Q16630 551 aaKnown RBP eCLIP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 TECRLQ5HYJ1 363 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 UBAP2Q5T6F2 1119 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 FNDC7Q5VTL7 733 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZNF585AQ6P3V2 769 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 POMZP3Q6PJE2 187 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 GOLGA7Q7Z5G4 137 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 CCDC25Q86WR0 208 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 PLD6Q8N2A8 252 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ZNF615Q8N8J6 731 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 NEIL3Q8TAT5 605 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 DOK4Q8TEW6 326 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 RIT1Q92963 219 aa11.26□□□□□ -0.61
MSH5-SAPCD1-205ENST00000476085 ADIPOR1Q96A54 375 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms