RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 GJB7Q6PEY0 223 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 FIGLAQ6QHK4 219 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 SYT10Q6XYQ8 523 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC26A9Q7LBE3 791 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ADGRD2Q7Z7M1 963 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 NR2C2APQ86WQ0 139 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 MICU2Q8IYU8 434 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 MCOLN2Q8IZK6 566 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 GCNT2Q8N0V5 402 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CLEC4FQ8N1N0 589 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 C17orf78Q8N4C9 275 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 GATSQ8NAP1 163 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 SRFBP1Q8NEF9 429 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 OR4C5Q8NGB2 326 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 OR52L2PQ8NGH6 319 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 NUDCD2Q8WVJ2 157 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ARNTL2Q8WYA1 636 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ADIPOR1Q96A54 375 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 RFT1Q96AA3 541 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 GPR78Q96P69 363 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 TEFMQ96QE5 360 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 TMEM246Q9BRR3 403 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 TUBGCP2Q9BSJ2 902 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 LRRC1Q9BTT6 524 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 NPLQ9BXD5 320 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 STRADBQ9C0K7 418 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 RIMS4Q9H426 269 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 GOLPH3Q9H4A6 298 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CDCP1Q9H5V8 836 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 NDUFA13Q9P0J0 144 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 MDFICQ9P1T7 246 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 KIAA1456Q9P272 454 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 RNF14Q9UBS8 474 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CA5BQ9Y2D0 317 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 AP3M1Q9Y2T2 418 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CPDO75976 1380 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 MAP3K15Q6ZN16 1313 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TRIP12Q14669 1992 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3DA0A087WVF3 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3IA0A087WXS9 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3EA0A087X179 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3KA0A087X1G2 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 A0A1W2PQ72 361 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 GSTTP1A0A1W2PQM5 241 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 RPS10-NUDT3A0A1W2PQS6 291 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3BA6NDS4 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3FA6NER0 549 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ANKRD30BLA7E2S9 258 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ERVV-1B6SEH8 477 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3LB9A6J9 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 KLRF2D3W0D1 207 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 USP17L23D6RBM5 183 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 E7ESA3 106 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 RHODO00212 210 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 WWP2O00308 870 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 BCKDKO14874 412 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 NKX2-8O15522 239 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 DUX1O43812 170 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SDC3O75056 442 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ATP2C2O75185 946 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 OR4F21O95013 312 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ZWINTO95229 277 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 RAB3DO95716 219 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 KRT7P08729 469 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 MMP10P09238 476 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3HP0C7X1 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CPA3P15088 417 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 S1PR1P21453 382 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CNR1P21554 472 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CD72P21854 359 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 EEF1B2P24534 225 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 AZGP1P25311 298 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 IL12BP29460 328 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 PPP2R1AP30153 589 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 MAGEA9P43362 315 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ACADVLP49748 655 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SERPINB8P50452 374 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 PPT1P50897 306 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 FOXL2P58012 376 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 MAT1AQ00266 395 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ROR2Q01974 943 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 IRF8Q02556 426 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ARHGAP1Q07960 439 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CYP24A1Q07973 514 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 IFFO1Q0D2I5 559 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 FUT7Q11130 342 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 VEZF1Q14119 521 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 NFATC4Q14934 902 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 RNPS1Q15287 305 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 UAP1Q16222 522 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 KIF19Q2TAC6 998 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 C2CD6Q53TS8 623 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 DCAF6Q58WW2 860 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC25A53Q5H9E4 307 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CTSL3PQ5NE16 218 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 LCE1EQ5T753 118 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 C20orf194Q5TEA3 1177 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 RNLSQ5VYX0 342 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TMEM198Q66K66 360 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms