RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ZNF750Q32MQ0 723 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 DCST1Q5T197 706 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 WDR53Q7Z5U6 358 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-217ENST00000466159 PSMA8Q8TAA3 256 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF354BQ96LW1 612 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 AMDHD1Q96NU7 426 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 OR5M11Q96RB7 305 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 KXD1Q9BQD3 176 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 YIPF4Q9BSR8 244 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 MROQ9BYG7 248 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 PITHD1Q9GZP4 211 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-217ENST00000466159 DSN1Q9H410 356 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 IGFLR1Q9H665 355 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 TRPV4Q9HBA0 871 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 SEMA3GQ9NS98 782 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ACSS1Q9NUB1 689 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-217ENST00000466159 TRPC4Q9UBN4 977 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ADAM29Q9UKF5 820 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 TMCC3Q9ULS5 477 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 A0A1W2PS29 197 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 M0R3H8 397 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 KPNA4O00629 521 aaPredicted RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 PGRMC2O15173 223 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 TPST2O60704 377 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 CLEC3AO75596 197 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 ERAL1O75616 437 aaKnown RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 PDE9AO76083 593 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 CEACAM5P06731 702 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 H1F0P07305 194 aaKnown RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 DBTP11182 482 aaKnown RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 EN2P19622 333 aaPredicted RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 RGS6P49758 472 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 NCBP2P52298 156 aaKnown RBP eCLIP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 SEC13P55735 322 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 DMPKQ09013 629 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 HYAL2Q12891 473 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 KRT33BQ14525 404 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 TCEA2Q15560 299 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 GPR19Q15760 415 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 NIPAL1Q6NVV3 410 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 RAB42Q8N4Z0 105 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF513Q8N8E2 541 aaPredicted RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 OR8K5Q8NH50 307 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 SLC7A13Q8TCU3 470 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 JPH3Q8WXH2 748 aaPredicted RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 SLC35G5Q96KT7 338 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF607Q96SK3 696 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 CENPOQ9BU64 300 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 UCK2Q9BZX2 261 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 BTBD1Q9H0C5 482 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 SLC6A17Q9H1V8 727 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 MVB12BQ9H7P6 319 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 SYNPO2LQ9H987 977 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 FZD3Q9NPG1 666 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 SLC35C2Q9NQQ7 365 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 PHPT1Q9NRX4 125 aaPredicted RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 ZCCHC3Q9NUD5 404 aaKnown RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 OBP2AQ9NY56 170 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 TAS2R7Q9NYW3 318 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 ENOPH1Q9UHY7 261 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 KLHL20Q9Y2M5 609 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.46□□□□□ -1.05
SYNE1-217ENST00000466159 GPSM3Q9Y4H4 160 aa8.46□□□□□ -1.05
SYNE1-217ENST00000466159 PDZK1P1A8MUH7 402 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 HAT1O14929 419 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 DSCR3O14972 297 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 ZW10O43264 779 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 ERI3O43414 337 aaKnown RBP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 ENTPD6O75354 484 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 ADAP00813 363 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 RPLP0P05388 317 aaKnown RBP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 NR2F1P10589 423 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 OSMP13725 252 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 C5AR1P21730 350 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 MAT2AP31153 395 aaKnown RBP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 TIE1P35590 1138 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 UGT2B10P36537 528 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 LSM11P83369 360 aaKnown RBP eCLIP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 RELAQ04206 551 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 DUSP2Q05923 314 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 SLAMF1Q13291 335 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 DNASE1L3Q13609 305 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 MED22Q15528 200 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 ZNF404Q494X3 552 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 KIAA1211LQ6NV74 962 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 YAF2Q8IY57 180 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 CACTIN-AS1Q8N1I8 211 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 FBXL6Q8N531 539 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 DNAJC5GQ8N7S2 189 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 FAM46DQ8NEK8 389 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 OR52E1Q8NGJ3 308 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 GANCQ8TET4 914 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 CHCHD6Q9BRQ6 235 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 RPP25Q9BUL9 199 aaKnown RBP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 MKRN2Q9H000 416 aaKnown RBP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 SLC6A20Q9NP91 592 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 MRPS30Q9NP92 439 aaKnown RBP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 CLN6Q9NWW5 311 aa8.46□□□□□ -1.06
SYNE1-217ENST00000466159 TRNAU1APQ9NX07 287 aaKnown RBP8.46□□□□□ -1.06
SYNE1-217ENST00000466159 P2RX2Q9UBL9 471 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms