RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 NCLNQ969V3 563 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 EXOSC8Q96B26 276 aaKnown RBP18.47■□□□□ 0.55
COL9A3-204ENST00000463487 MTERF3Q96E29 417 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 ZNF764Q96H86 408 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-204ENST00000463487 FBXL20Q96IG2 436 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 TSSK3Q96PN8 268 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 BBS4Q96RK4 519 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 LMF1Q96S06 567 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 PRPF18Q99633 342 aaKnown RBP18.47■□□□□ 0.55
COL9A3-204ENST00000463487 OR8D2Q9GZM6 311 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 AKTIPQ9H8T0 292 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 SLC35C2Q9NQQ7 365 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 ASIC5Q9NY37 505 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 HEY2Q9UBP5 337 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 CACNA1GO43497 2377 aa18.47■□□□□ 0.55
COL9A3-204ENST00000463487 TRBV11-1A0A0K0K1C0 115 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 DYTNA2CJ06 578 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 ATP1B1P05026 303 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 FEN1P39748 380 aaKnown RBP18.46■□□□□ 0.55
COL9A3-204ENST00000463487 MEP1AQ16819 746 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 HSDL2Q6YN16 418 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 TICAM1Q8IUC6 712 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 ZADH2Q8N4Q0 377 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 SIRT6Q8N6T7 355 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 APCDD1LQ8NCL9 501 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 OR5L2Q8NGL0 311 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.46■□□□□ 0.55
COL9A3-204ENST00000463487 UCN3Q969E3 161 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 PPWD1Q96BP3 646 aaKnown RBP18.46■□□□□ 0.55
COL9A3-204ENST00000463487 PPCDCQ96CD2 204 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 C1orf50Q9BV19 199 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 CNPPD1Q9BV87 410 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 REEP4Q9H6H4 257 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 ZNF71Q9NQZ8 489 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-204ENST00000463487 TAS2R7Q9NYW3 318 aa18.46■□□□□ 0.55
COL9A3-204ENST00000463487 WASHC1A8K0Z3 465 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 CDK2AP1O14519 115 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 FCHO1O14526 889 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 ZFAND5O76080 213 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 TGDSO95455 350 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 CELA2AP08217 269 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 TACR1P25103 407 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 MFAP5Q13361 173 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 ZNF267Q14586 743 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-204ENST00000463487 H3F3CQ6NXT2 135 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 PCSK4Q6UW60 755 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 IGFL3Q6UXB1 125 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 SPATA19Q7Z5L4 167 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 OR8K3Q8NH51 312 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 SENP5Q96HI0 755 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-204ENST00000463487 ATAD3AQ9NVI7 634 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 GIMAP2Q9UG22 337 aa18.45■□□□□ 0.54
COL9A3-204ENST00000463487 OR6C76A6NM76 312 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 AKAP10O43572 662 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 TBX19O60806 448 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 SLITRK5O94991 958 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 DDAH2O95865 285 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 PRPS1L1P21108 318 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 SOX11P35716 441 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 CASRP41180 1078 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 NXNQ6DKJ4 435 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 OGFOD2Q6N063 350 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 RNF111Q6ZNA4 994 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 LINC00696Q6ZRV3 163 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 FAM47EQ6ZV65 393 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 ACAD11Q709F0 780 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 VWA5B2Q8N398 1253 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 NATD1Q8N6N6 113 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 TEX19Q8NA77 164 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 CLHC1Q8NHS4 586 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 ZFP28Q8NHY6 868 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 PSMF1Q92530 271 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 GFM2Q969S9 779 aaKnown RBP18.44■□□□□ 0.54
COL9A3-204ENST00000463487 CNRIP1Q96F85 164 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-204ENST00000463487 EGLN2Q96KS0 407 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 BRINP2Q9C0B6 783 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 SEMA4CQ9C0C4 833 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 CXorf21Q9HAI6 301 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 SLCO1B3Q9NPD5 702 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 BAIAP2L1Q9UHR4 511 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 ERVK-19Q9WJR5 959 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 USH1CQ9Y6N9 552 aa18.44■□□□□ 0.54
COL9A3-204ENST00000463487 ITPR1Q14643 2758 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 SDHDO14521 159 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 PDPK1O15530 556 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 DIAPH2O60879 1101 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 LRATO95237 230 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 ACER2Q5QJU3 275 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 SLC29A4Q7RTT9 530 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 RPS19BP1Q86WX3 136 aaKnown RBP18.43■□□□□ 0.54
COL9A3-204ENST00000463487 CCDC116Q8IYX3 515 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 KIF2BQ8N4N8 673 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 OR7G1Q8NGA0 311 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 ZNF721Q8TF20 911 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 ERP27Q96DN0 273 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 ZNF681Q96N22 645 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 RYDENQ9NUL5 291 aaKnown RBP18.43■□□□□ 0.54
COL9A3-204ENST00000463487 STMN3Q9NZ72 180 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 SH3BP4Q9P0V3 963 aa18.43■□□□□ 0.54
COL9A3-204ENST00000463487 CFL2Q9Y281 166 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms