RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 DOCK3Q8IZD9 2030 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 OTOFQ9HC10 1997 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 PITPNM1O00562 1244 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SIGLEC5O15389 551 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 PROM1O43490 865 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 HCN1O60741 890 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 IFNW1P05000 195 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 PIPP12273 146 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 BDKRB1P46663 353 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 EVX1P49640 407 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SIGLEC14Q08ET2 396 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 MAP4K2Q12851 820 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 PIN1Q13526 163 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 STK11Q15831 433 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 L3MBTL4Q8NA19 623 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 ST8SIA2Q92186 375 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 ARHGAP39Q9C0H5 1083 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SLAMF7Q9NQ25 335 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 DIABLOQ9NR28 239 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 PPIEQ9UNP9 301 aaKnown RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 POM121CA8CG34 1229 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 EEF1E1O43324 174 aaKnown RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 CPEP16870 476 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 RPS13P62277 151 aaKnown RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 MEF2AQ02078 507 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 LGALSLQ3ZCW2 172 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SYT14P1Q58G82 188 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 TMEM81Q6P7N7 255 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 CXCL17Q6UXB2 119 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 CFAP77Q6ZQR2 320 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 LILRA3Q8N6C8 439 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 LRRC17Q8N6Y2 441 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 VPS37AQ8NEZ2 397 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SLC9A6Q92581 669 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SIPA1Q96FS4 1042 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 LINC00052Q96N35 136 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 GPA33Q99795 319 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 WRAP53Q9BUR4 548 aaKnown RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 PRR14Q9BWN1 585 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SORBS1Q9BX66 1292 aaKnown RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 ABCG5Q9H222 651 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 C1GALT1Q9NS00 363 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 HCSTQ9UBK5 93 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 ING4Q9UNL4 249 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SF3B6Q9Y3B4 125 aaKnown RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 PPP2R3BQ9Y5P8 575 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 QSOX1O00391 747 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SLC30A4O14863 429 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 MPZL2O60487 215 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 JUPP14923 745 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF8P17098 575 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 SLC6A12P48065 614 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 DCDC1P59894 354 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 PPP3R1P63098 170 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 TEKQ02763 1124 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 DUSP4Q13115 394 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 NAE1Q13564 534 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF791Q3KP31 576 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 CTXN3Q4LDR2 81 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 IDNKQ5T6J7 187 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 GDF6Q6KF10 455 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 RSPO2Q6UXX9 243 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 MSANTD1Q6ZTZ1 278 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 KANSL1Q7Z3B3 1105 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 KIAA0907Q7Z7F0 614 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 NR2C2APQ86WQ0 139 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 NXPE1Q8N323 547 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 C2orf69Q8N8R5 385 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 WFDC5Q8TCV5 224 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 UCN3Q969E3 161 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 THSD1Q9NS62 852 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 RDH8Q9NYR8 311 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF624Q9P2J8 865 aaPredicted RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 RUVBL1Q9Y265 456 aaKnown RBP11.12□□□□□ -0.63
CPSF3-202ENST00000460593 TRPV2Q9Y5S1 764 aa11.12□□□□□ -0.63
CPSF3-202ENST00000460593 LGI1O95970 557 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 CH25HO95992 272 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 BCHEP06276 602 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 CELP19835 753 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 ALDH9A1P49189 494 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 CDH4P55283 916 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 MRPL58Q14197 206 aaKnown RBP11.11□□□□□ -0.63
CPSF3-202ENST00000460593 GINS1Q14691 196 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 SF3A2Q15428 464 aaKnown RBP11.11□□□□□ -0.63
CPSF3-202ENST00000460593 PLK5Q496M5 336 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 CXorf57Q6NSI4 855 aaKnown RBP11.11□□□□□ -0.63
CPSF3-202ENST00000460593 RNF165Q6ZSG1 346 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 LRRC70Q7Z2Q7 622 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 ADGRD2Q7Z7M1 963 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 HS6ST3Q8IZP7 471 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 FAM9CQ8IZT9 166 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 CHTF18Q8WVB6 975 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 HSD17B8Q92506 261 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 RBP7Q96R05 134 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 RBCK1Q9BYM8 510 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 RNF32Q9H0A6 362 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 RDH14Q9HBH5 336 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 MCCC2Q9HCC0 563 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 DSPPQ9NZW4 1301 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 TMEM202A6NGA9 273 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms