RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 ATG4BQ9Y4P1 393 aa11.36□□□□□ -0.59
SMPD4-213ENST00000454468 PCDHGA6Q9Y5G7 932 aa11.36□□□□□ -0.59
SMPD4-213ENST00000454468 ENPP4Q9Y6X5 453 aa11.36□□□□□ -0.59
SMPD4-213ENST00000454468 TLR4O00206 839 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 IL1RNP18510 177 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 HOXA9P31269 272 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 MC3RP41968 323 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 GSTM5P46439 218 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 PCYT1AP49585 367 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 RGS8P57771 180 aaPredicted RBP11.35□□□□□ -0.59
SMPD4-213ENST00000454468 LSM11P83369 360 aaKnown RBP eCLIP11.35□□□□□ -0.596e-6■□□□□ 10.9
SMPD4-213ENST00000454468 DEFB110Q30KQ9 67 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 C6orf132Q5T0Z8 1188 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 PIP5KL1Q5T9C9 394 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 IRAK1BP1Q5VVH5 260 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 OR9A2Q8NGT5 310 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 SETD7Q8WTS6 366 aaKnown RBP11.35□□□□□ -0.59
SMPD4-213ENST00000454468 VOPP1Q96AW1 172 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 COQ8BQ96D53 544 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 MYADMQ96S97 322 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 TBX5Q99593 518 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 SGPP1Q9BX95 441 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 ITPAQ9BY32 194 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 SNTG1Q9NSN8 517 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 EHD3Q9NZN3 535 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 GPR34Q9UPC5 381 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 HAT1O14929 419 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 NARSO43776 548 aaKnown RBP11.35□□□□□ -0.59
SMPD4-213ENST00000454468 NT5EP21589 574 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 CPN2P22792 545 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 CMPK1P30085 196 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 HOXD11P31277 338 aaPredicted RBP11.35□□□□□ -0.59
SMPD4-213ENST00000454468 LIPAP38571 399 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 FADDQ13158 208 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 ZNF846Q147U1 533 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 NNATQ16517 81 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 CCNJQ5T5M9 372 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 B3GLCTQ6Y288 498 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 ETFBKMTQ8IXQ9 262 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 FBXL6Q8N531 539 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 LINC01555Q8NAE3 123 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 B3GNT7Q8NFL0 401 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 OR5P2Q8WZ92 322 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 DNAJA3Q96EY1 480 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 COX4I2Q96KJ9 171 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 C7orf34Q96L11 122 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 TREX2Q9BQ50 279 aaPredicted RBP11.35□□□□□ -0.59
SMPD4-213ENST00000454468 TUBA1CQ9BQE3 449 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 C1QTNF7Q9BXJ2 289 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 UCK2Q9BZX2 261 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 FGF22Q9HCT0 170 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 SLC35C2Q9NQQ7 365 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 C1GALT1Q9NS00 363 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 CNIH4Q9P003 139 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 TMEM9Q9P0T7 183 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 P2RX2Q9UBL9 471 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 ENPP5Q9UJA9 477 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 CDH7Q9ULB5 785 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 SLC27A6Q9Y2P4 619 aa11.35□□□□□ -0.59
SMPD4-213ENST00000454468 NPIPA5A0A0B4J1W7 369 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 SH3PXD2BA1X283 911 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 NPIPA7E9PJI5 369 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 H3BQ06 376 aaPredicted RBP11.34□□□□□ -0.59
SMPD4-213ENST00000454468 WWP2O00308 870 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 SLC16A6O15403 523 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 NTN1O95631 604 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 NPIPA8P0DM63 369 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 SERPINB1P30740 379 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 DRD3P35462 400 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 SOX3P41225 446 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 PXNP49023 591 aaPredicted RBP11.34□□□□□ -0.59
SMPD4-213ENST00000454468 CRISP3P54108 245 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 PRRT3Q5FWE3 981 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 ZNF311Q5JNZ3 666 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 LCTLQ6UWM7 567 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 UNC5DQ6UXZ4 953 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 MSANTD1Q6ZTZ1 278 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 ADGRF3Q8IZF5 1079 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 ACOT4Q8N9L9 421 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 GGHQ92820 318 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 MUL1Q969V5 352 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 C1GALT1C1Q96EU7 318 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 PDXPQ96GD0 296 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 FAM83CQ9BQN1 747 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 H2AFY2Q9P0M6 372 aaPredicted RBP11.34□□□□□ -0.59
SMPD4-213ENST00000454468 MSRAQ9UJ68 235 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 PTHP01270 115 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 CTSEP14091 401 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 CSNK2A2P19784 350 aaPredicted RBP11.34□□□□□ -0.59
SMPD4-213ENST00000454468 PIK3CBP42338 1070 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 ARPC4P59998 168 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 RPS21P63220 83 aaKnown RBP11.34□□□□□ -0.59
SMPD4-213ENST00000454468 CSNK1G2P78368 415 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 TUBA3CQ13748 450 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 PROX2Q3B8N5 592 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 METRNLQ641Q3 311 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 METTL27Q8N6F8 245 aaPredicted RBP11.34□□□□□ -0.59
SMPD4-213ENST00000454468 OR5M11Q96RB7 305 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 MS4A8Q9BY19 250 aa11.34□□□□□ -0.59
SMPD4-213ENST00000454468 POLR2J2Q9GZM3 115 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms