RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PLGP00747 810 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 MC3RP41968 323 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 CLCN2P51788 898 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SNTA1Q13424 505 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF423Q2M1K9 1284 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 UGT3A2Q3SY77 523 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 GGTA1PQ4G0N0 100 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 METRNLQ641Q3 311 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 RPTNQ6XPR3 784 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM150AQ86TG1 271 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM151BQ8IW70 566 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 UBALD2Q8IYN6 164 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 NAGSQ8N159 534 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 UBTD2Q8WUN7 234 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SLC45A3Q96JT2 553 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 COQ10AQ96MF6 247 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TRIM2Q9C040 744 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF624Q9P2J8 865 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SRPK3Q9UPE1 567 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 MGAT4BQ9UQ53 548 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 PCDHGA7Q9Y5G6 932 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 H0YGG7 62 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 H0YIV9 168 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 H3BNX3 289 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TOR1BO14657 336 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 FNTBP49356 437 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ARF3P61204 181 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 RGNQ15493 299 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ATP6AP1Q15904 470 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 LIN52Q52LA3 116 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TRIM61Q5EBN2 209 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 RSBN1Q5VWQ0 802 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 SLCO4C1Q6ZQN7 724 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 IZUMO1Q8IYV9 350 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 OR2L3Q8NG85 312 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM234Q8WY98 164 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 EZH1Q92800 747 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TANKQ92844 425 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 EFHD2Q96C19 240 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 DGCR14Q96DF8 476 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 FAM129BQ96TA1 746 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TBX5Q99593 518 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM5Q9Y2B1 443 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 DAPL1A0PJW8 107 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 EFCAB9A8MZ26 197 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 SLC30A4O14863 429 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PRAMEF2O60811 474 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 LDB3O75112 727 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 GGT1P19440 569 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 XCR1P46094 333 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CD47Q08722 323 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CCNIQ14094 377 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PRPF38BQ5VTL8 546 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 KCTD8Q6ZWB6 473 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 AP3S1Q92572 193 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CRB3Q9BUF7 120 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ASPNQ9BXN1 380 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 LDAHQ9H6V9 325 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 GAREM1Q9H706 876 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ZC4H2Q9NQZ6 224 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 DAPK2Q9UIK4 370 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 RBBP6Q7Z6E9 1792 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 SLC5A10A0PJK1 596 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 MAGEA12P43365 314 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PYCR3Q53H96 274 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PRSS36Q5K4E3 855 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PIP5KL1Q5T9C9 394 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 FBXO27Q8NI29 283 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TSEN15Q8WW01 171 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PIP5K1AQ99755 562 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 SLC6A16Q9GZN6 736 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CMTM6Q9NX76 183 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 VAPAQ9P0L0 249 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PRDM4Q9UKN5 801 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 MAN2B2Q9Y2E5 1009 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PCDHGB7Q9Y5F8 929 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TRIP11Q15643 1979 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 FOXE1O00358 373 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 MAGEB3O15480 346 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TAPBPO15533 448 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TRIM3O75382 744 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 NADKO95544 446 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ETS2P15036 469 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ENDOUP21128 410 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 CBLP22681 906 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 HOXC12P31275 282 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 RANBP1P43487 201 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PCYT1AP49585 367 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PPP2CBP62714 309 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 TRA2BP62995 288 aaKnown RBP7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PPP2CAP67775 309 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ATP1A4Q13733 1029 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 FAM69BQ5VUD6 431 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 KBTBD2Q8IY47 623 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 MFSD9Q8NBP5 474 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF740Q8NDX6 193 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 PROKR2Q8NFJ6 384 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 SLC22A8Q8TCC7 542 aa7.03□□□□□ -1.28
SYNE1-213ENST00000448038 IPCEF1Q8WWN9 437 aaPredicted RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms