RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 KRT16P08779 473 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ICAM2P13598 275 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 MAOAP21397 527 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 GALNSP34059 522 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 DGKQP52824 942 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 BTG2P78543 158 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 CAMK2BQ13554 666 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 NFYCQ13952 458 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 MLC1Q15049 377 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ELAVL1Q15717 326 aaKnown RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 IRAK1BP1Q5VVH5 260 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 BROXQ5VW32 411 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 FAAH2Q6GMR7 532 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 FAM198BQ6UWH4 519 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 C16orf89Q6UX73 402 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ANGPTL8Q6UXH0 198 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 LRRC69Q6ZNQ3 347 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 SHISA6Q6ZSJ9 500 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ZNF621Q6ZSS3 439 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 COX15Q7KZN9 410 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 TIPARPQ7Z3E1 657 aaKnown RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 GALNT12Q8IXK2 581 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 FITM2Q8N6M3 262 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 OR14A16Q8NHC5 309 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 KCNE4Q8WWG9 221 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 NKD1Q969G9 470 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ROPN1LQ96C74 230 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 DPH1Q9BZG8 443 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 CCDC86Q9H6F5 360 aaKnown RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 LANCL2Q9NS86 450 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 TAS2R9Q9NYW1 312 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 CES1P1Q9UKY3 287 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 DMXL1Q9Y485 3027 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 TMEM247A6NEH6 219 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 MYO1GB0I1T2 1018 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 AIM2O14862 343 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 DNAJB6O75190 326 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 COQ9O75208 318 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 JRKO75564 520 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 PRKRAO75569 313 aaKnown RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 SOX30O94993 753 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ATP1B1P05026 303 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 OTX2P32243 289 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 PGDP52209 483 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 RHAGQ02094 409 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ID2Q02363 134 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 ZNHIT3Q15649 155 aaPredicted RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 CPEB2Q7Z5Q1 589 aaKnown RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 TMEM151BQ8IW70 566 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 SCUBE1Q8IWY4 988 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 OR56A1Q8NGH5 318 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 CIDECQ96AQ7 238 aaPredicted RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 VPS33AQ96AX1 596 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 TEX37Q96LM6 180 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 AMDHD1Q96NU7 426 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 SPRY4Q9C004 299 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 SLC22A11Q9NSA0 550 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 DDX18Q9NVP1 670 aaKnown RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 PTGFRNQ9P2B2 879 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.47□□□□□ -0.89
CD44-207ENST00000425428 AP3M1Q9Y2T2 418 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 PCDHGA6Q9Y5G7 932 aa9.47□□□□□ -0.89
CD44-207ENST00000425428 AHCTF1Q8WYP5 2266 aa9.46□□□□□ -0.89
CD44-207ENST00000425428 C15orf38-AP3S2A0A0A6YYH1 394 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 TCRBV16S1A1N1A0A5B0 115 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 C17orf105B2RV13 164 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 C9JVG2 144 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 C6orf47O95873 294 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 SPINK2P20155 84 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 UQCRC2P22695 453 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 MMP11P24347 488 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 NUDT2P50583 147 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 EXT1Q16394 746 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 SFT2D3Q587I9 215 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 HLA-DQA1Q5Y7H0 255 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 RIPOR1Q6ZS17 1223 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 ERMP1Q7Z2K6 904 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 ARPINQ7Z6K5 226 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 DHDDSQ86SQ9 333 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 ANKRD46Q86W74 232 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 MMP21Q8N119 569 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 VWA5B2Q8N398 1253 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 POU5F2Q8N7G0 328 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 ANKRD9Q96BM1 317 aaPredicted RBP9.46□□□□□ -0.9
CD44-207ENST00000425428 CNRIP1Q96F85 164 aaPredicted RBP9.46□□□□□ -0.9
CD44-207ENST00000425428 CCDC115Q96NT0 180 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 SPSB2Q99619 263 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 CNPPD1Q9BV87 410 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 GLIPR2Q9H4G4 154 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 NECTIN3Q9NQS3 549 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 PRODH2Q9UF12 536 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 BCAP29Q9UHQ4 241 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 FAF1Q9UNN5 650 aaPredicted RBP9.46□□□□□ -0.9
CD44-207ENST00000425428 L3MBTL1Q9Y468 752 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 PCDHGB3Q9Y5G1 929 aa9.46□□□□□ -0.9
CD44-207ENST00000425428 A0A096LPI6 279 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 NSG1A0A0A6YYJ2 146 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 LOC101059948A0A1B0GTJ6 334 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 A8MUA0 341 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms