RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 C6orf47O95873 294 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 PAHP00439 452 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 HIST1H2AGP0C0S8 130 aaPredicted RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 ARAFP10398 606 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 NR2F6P10588 404 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 HIST1H2ADP20671 130 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 BTCP35070 178 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ATP12AP54707 1039 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ADAM15Q13444 863 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 FGFBP1Q14512 234 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 CDKN3Q16667 212 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 KLHL12Q53G59 568 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 UNC5DQ6UXZ4 953 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ADGRF3Q8IZF5 1079 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 IQCF1Q8N6M8 205 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 GATAD2BQ8WXI9 593 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 UFD1Q92890 307 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 HIST1H2AHQ96KK5 128 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 HIST1H2AJQ99878 128 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 H2AFJQ9BTM1 129 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 WRAP53Q9BUR4 548 aaKnown RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 POLDIP3Q9BY77 421 aaKnown RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 BHLHE41Q9C0J9 482 aaPredicted RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 PPA2Q9H2U2 334 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 TVP23BQ9NYZ1 205 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 MGAT4DA6NG13 374 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 AGAP14A8MT82 685 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 TSPAN4O14817 238 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 LANCL1O43813 399 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 SH3BGRLO75368 114 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 MTRF1O75570 445 aaKnown RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 ANXA3P12429 323 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 STOMP27105 288 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 GJA5P36382 358 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 NNMTP40261 264 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 NSG1P42857 185 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 B4GALNT1Q00973 533 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 ZNF177Q13360 481 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 SLC5A12Q1EHB4 618 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 LGALSLQ3ZCW2 172 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 GPR33Q49SQ1 333 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 ARMC12Q5T9G4 340 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 RNF219Q5W0B1 726 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 CXorf57Q6NSI4 855 aaKnown RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 PGBD2Q6P3X8 592 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 TRIM40Q6P9F5 258 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 C16orf62Q7Z3J2 963 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 DENND1CQ8IV53 801 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 VRK3Q8IV63 474 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 ARIH2OSQ8N7S6 290 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 GTF3C2Q8WUA4 911 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 HGDQ93099 445 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 ZNF582Q96NG8 517 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 RBP7Q96R05 134 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 C19orf43Q9BQ61 176 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 DPCDQ9BVM2 203 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 RSPO3Q9BXY4 272 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 POLR2J3Q9H1A7 115 aaKnown RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 TNFRSF10DQ9UBN6 386 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 ATP6V1HQ9UI12 483 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 MAP4K5Q9Y4K4 846 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 STON1Q9Y6Q2 735 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 RNF215Q9Y6U7 377 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 CCDC88CQ9P219 2028 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 OR10H3O60404 316 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 IFNA7P01567 189 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 ZDHHC11BP0C7U3 371 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 GAAP10253 952 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 TFPIP10646 304 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 CXCL3P19876 107 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 EPHA5P54756 1037 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 EFNB1P98172 346 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 RPA4Q13156 261 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 CCDC85BQ15834 202 aaPredicted RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 XKR6Q5GH73 641 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 OR5AK3PQ8NH89 298 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 WBP1Q96G27 269 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 LRR1Q96L50 414 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 KLHL15Q96M94 604 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 RNF32Q9H0A6 362 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 BRF2Q9HAW0 419 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 MRPS18AQ9NVS2 196 aaKnown RBP10.16□□□□□ -0.78
USP54-204ENST00000422491 KCMF1Q9P0J7 381 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 UBQLN2Q9UHD9 624 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 ZNF222Q9UK12 451 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 ANGPT4Q9Y264 503 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 FKBP7Q9Y680 259 aa10.16□□□□□ -0.78
USP54-204ENST00000422491 PIPSLA2A3N6 862 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 E7EQ34 232 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 H0YIV9 168 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 GFYI3L273 518 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 APOL3O95236 402 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 HSD3B1P14060 373 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 GLULP15104 373 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 ZNF8P17098 575 aaPredicted RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 HSD3B2P26439 372 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 DOC2AQ14183 400 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 DUSP6Q16828 381 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 MPEG1Q2M385 716 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms