RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 IKZF5Q9H5V7 419 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 RPF2Q9H7B2 306 aaKnown RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 CXorf36Q9H7Y0 433 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 ZFAND3Q9H8U3 227 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 CACYBPQ9HB71 228 aaKnown RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 C3orf14Q9HBI5 128 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 S100A14Q9HCY8 104 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 SLAMF7Q9NQ25 335 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 SLC6A13Q9NSD5 602 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 STARD5Q9NSY2 213 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 CUTCQ9NTM9 273 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 ZCCHC3Q9NUD5 404 aaKnown RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 DDX18Q9NVP1 670 aaKnown RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 THUMPD1Q9NXG2 353 aaKnown RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 AKAP7Q9P0M2 348 aaPredicted RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 C6orf203Q9P0P8 240 aaPredicted RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 TMEM9Q9P0T7 183 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 SEMA5BQ9P283 1151 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 STX18Q9P2W9 335 aaKnown RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 P2RX2Q9UBL9 471 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 NDOR1Q9UHB4 597 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 EGFL7Q9UHF1 273 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 RAPGEFL1Q9UHV5 662 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 ANAPC2Q9UJX6 822 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 RPS6KA6Q9UK32 745 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 ATXN7L1Q9ULK2 861 aaPredicted RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 CDC14AQ9UNH5 594 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 FAF1Q9UNN5 650 aaPredicted RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 SAMD4AQ9UPU9 718 aaKnown RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 BTBD3Q9Y2F9 522 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 MRPS2Q9Y399 296 aaKnown RBP5.62□□□□□ -1.51
HMGB3-202ENST00000419110 GMEB1Q9Y692 573 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 OTOGLQ3ZCN5 2332 aa5.62□□□□□ -1.51
HMGB3-202ENST00000419110 A8MU76 341 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 MYO1GB0I1T2 1018 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 CLDN4O14493 209 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ACOT8O14734 319 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 EMC8O43402 210 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 PROM1O43490 865 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 B4GAT1O43505 415 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 DYRK3O43781 588 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 FOXD2O60548 495 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 PDE9AO76083 593 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 BAG2O95816 211 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 NTRK1P04629 796 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 HBQ1P09105 142 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ARAFP10398 606 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 UMPSP11172 480 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 CPMP14384 443 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ANPEPP15144 967 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 NCK1P16333 377 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 CKMT2P17540 419 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 GPX2P18283 190 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 IL10P22301 178 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 LORP23490 312 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ACP1P24666 158 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SLC7A1P30825 629 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 CSTF2P33240 577 aaKnown RBP eCLIP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 MSX2P35548 267 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SOX11P35716 441 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 MC3RP41968 323 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 CRATP43155 626 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 XCR1P46094 333 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 PRIM2P49643 509 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 PCBP4P57723 403 aaKnown RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 CCL7P80098 99 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SIM1P81133 766 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 RHDQ02161 417 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 FOLH1Q04609 750 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SLC34A1Q06495 639 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ZNF155Q12901 538 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SLC13A2Q13183 592 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SLC14A1Q13336 389 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SQSTM1Q13501 440 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SCARB2Q14108 478 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 GNA13Q14344 377 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 TRIP10Q15642 601 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 CEBPEQ15744 281 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ZNF630Q2M218 657 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 MPEG1Q2M385 716 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 VMACQ2NL98 169 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 FAM98BQ52LJ0 330 aaKnown RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 TBCELQ5QJ74 424 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 SAXO2Q658L1 398 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 TMEM107Q6UX40 140 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 CEACAM20Q6UY09 585 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 RBM44Q6ZP01 1051 aaKnown RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 LRRC74BQ6ZQY2 392 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 USP53Q70EK8 1073 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 PRSS41Q7RTY9 318 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ZNF551Q7Z340 670 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-202ENST00000419110 RNF130Q86XS8 419 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 TMEM126BQ8IUX1 230 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ZNF595Q8IYB9 648 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ZZZ3Q8IYH5 903 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 EID3Q8N140 333 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 PQLC1Q8N2U9 271 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 ARHGEF39Q8N4T4 335 aa5.61□□□□□ -1.51
HMGB3-202ENST00000419110 METTL27Q8N6F8 245 aaPredicted RBP5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms