RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CNOT3O75175 753 aaKnown RBP13.36□□□□□ -0.27
SF3B1-204ENST00000414963 CPSF4O95639 269 aaKnown RBP13.36□□□□□ -0.27
SF3B1-204ENST00000414963 RAB40ALP0C0E4 278 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 C8orf89P0DMQ9 161 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 EFNA1P20827 205 aaPredicted RBP13.36□□□□□ -0.27
SF3B1-204ENST00000414963 MAOAP21397 527 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 RBMS1P29558 406 aaKnown RBP13.36□□□□□ -0.27
SF3B1-204ENST00000414963 SLC25A3Q00325 362 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 STX4Q12846 297 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 RTP5Q14D33 572 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 DNAL1Q4LDG9 190 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 RUNDC3AQ59EK9 446 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 C16orf89Q6UX73 402 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 ZNF551Q7Z340 670 aaPredicted RBP13.36□□□□□ -0.27
SF3B1-204ENST00000414963 LAPTM4BQ86VI4 370 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 MARCH9Q86YJ5 346 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 MSRB3Q8IXL7 192 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 ST13P4Q8IZP2 240 aaPredicted RBP13.36□□□□□ -0.27
SF3B1-204ENST00000414963 ESX1Q8N693 406 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 OR4A15Q8NGL6 344 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 ZNF675Q8TD23 568 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 RNF31Q96EP0 1072 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 PTCHD1Q96NR3 888 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 SPSB2Q99619 263 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 PELOQ9BRX2 385 aaKnown RBP13.36□□□□□ -0.27
SF3B1-204ENST00000414963 ALOXE3Q9BYJ1 711 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 VN1R1Q9GZP7 353 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 SEMA3GQ9NS98 782 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 SLC6A13Q9NSD5 602 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 SIRT3Q9NTG7 399 aaPredicted RBP13.36□□□□□ -0.27
SF3B1-204ENST00000414963 SLC25A37Q9NYZ2 338 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 VAPAQ9P0L0 249 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 VPS4AQ9UN37 437 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 NEUROG3Q9Y4Z2 214 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 C15orf38-AP3S2A0A0A6YYH1 394 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 TCRBV16S1A1N1A0A5B0 115 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 OR2W5A6NFC9 320 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 GYG2O15488 501 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 CDC123O75794 336 aaPredicted RBP13.35□□□□□ -0.27
SF3B1-204ENST00000414963 UQCRC2P22695 453 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 SLC6A2P23975 617 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 SLC5A2P31639 672 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 STT3AP46977 705 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 EFNA3P52797 238 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 PSME3P61289 254 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 MXRA7P84157 204 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 PLIN5Q00G26 463 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 ID2Q02363 134 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 MGAT2Q10469 447 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 MAP4K2Q12851 820 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 PUM1Q14671 1186 aaKnown RBP eCLIP13.35□□□□□ -0.27
SF3B1-204ENST00000414963 NCF4Q15080 339 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 MINDY4Q4G0A6 757 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 MLIPQ5VWP3 458 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 NANOGP8Q6NSW7 305 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 FAM199XQ6PEV8 388 aaPredicted RBP13.35□□□□□ -0.27
SF3B1-204ENST00000414963 TMEM64Q6YI46 380 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 ZNF621Q6ZSS3 439 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 ARPINQ7Z6K5 226 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 TRIML2Q8N7C3 387 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 OR8J3Q8NGG0 315 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 CTHRC1Q96CG8 243 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 RBM18Q96H35 190 aaKnown RBP13.35□□□□□ -0.27
SF3B1-204ENST00000414963 ANKRD27Q96NW4 1050 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 EPS8L2Q9H6S3 715 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 CXorf36Q9H7Y0 433 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 NANOGQ9H9S0 305 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 IL1RL2Q9HB29 575 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 ASCL3Q9NQ33 180 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 GPN3Q9UHW5 284 aaPredicted RBP13.35□□□□□ -0.27
SF3B1-204ENST00000414963 MKL2Q9ULH7 1088 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 FER1L5A0AVI2 2057 aa13.35□□□□□ -0.27
SF3B1-204ENST00000414963 A0A087WV62 115 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 TEX51A0A1B0GUA7 166 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 ERICH4A6NGS2 130 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 IDSB3KWA1 339 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 STMND1H3BQB6 276 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 PCDH17O14917 1159 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 PLOD3O60568 738 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 KLF7O75840 302 aaPredicted RBP13.34□□□□□ -0.27
SF3B1-204ENST00000414963 ANP32DO95626 131 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 GSNP06396 782 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 PPIBP23284 216 aaKnown RBP13.34□□□□□ -0.27
SF3B1-204ENST00000414963 SOX18P35713 384 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 MAGEA8P43361 318 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 CDK9P50750 372 aaKnown RBP13.34□□□□□ -0.27
SF3B1-204ENST00000414963 HSPB3Q12988 150 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 CAPRIN1Q14444 709 aaKnown RBP13.34□□□□□ -0.27
SF3B1-204ENST00000414963 NSDHLQ15738 373 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 PRICKLE4Q2TBC4 344 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 SPATS1Q496A3 300 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 ZNF628Q5EBL2 1059 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 SLC15A3Q8IY34 581 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 DEFB107AQ8IZN7 70 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 NLGN4XQ8N0W4 816 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 ARHGAP24Q8N264 748 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 NLGN4YQ8NFZ3 816 aaPredicted RBP13.34□□□□□ -0.27
SF3B1-204ENST00000414963 OR9A2Q8NGT5 310 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 SFXN5Q8TD22 340 aa13.34□□□□□ -0.27
SF3B1-204ENST00000414963 ZFP90Q8TF47 636 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms