RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	APLF	Q8IW19	511 aa	Predicted RBP	12.3	□□□□□ -0.44
SF1-206	ENST00000413725	APOBEC4	Q8WW27	367 aa	Known RBP	12.3	□□□□□ -0.44
SF1-206	ENST00000413725	RIT1	Q92963	219 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	CNRIP1	Q96F85	164 aa	Predicted RBP	12.3	□□□□□ -0.44
SF1-206	ENST00000413725	ART5	Q96L15	291 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	ZBTB18	Q99592	522 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	WDR77	Q9BQA1	342 aa	Predicted RBP	12.3	□□□□□ -0.44
SF1-206	ENST00000413725	TMEM120A	Q9BXJ8	343 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	BRINP2	Q9C0B6	783 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	ING2	Q9H160	280 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	PRORY	Q9H606	182 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	KLHL14	Q9P2G3	628 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	ATP6V1H	Q9UI12	483 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	TRIM33	Q9UPN9	1127 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	EXO1	Q9UQ84	846 aa	Known RBP	12.3	□□□□□ -0.44
SF1-206	ENST00000413725	KCNMB2	Q9Y691	235 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	EXPH5	Q8NEV8	1989 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	LAMA5	O15230	3695 aa		12.3	□□□□□ -0.44
SF1-206	ENST00000413725	GMNC	A6NCL1	334 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	GABRR3	A8MPY1	467 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	PDPK1	O15530	556 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	ATP1B1	P05026	303 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	ITGB2	P05107	769 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	MPI	P34949	423 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	PGD	P52209	483 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	ARFIP2	P53365	341 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	SLC26A5	P58743	744 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	CHAF1B	Q13112	559 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	SPRED3	Q2MJR0	410 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	DPY19L1	Q2PZI1	675 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	BTBD16	Q32M84	506 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	PDCD4	Q53EL6	469 aa	Known RBP	12.29	□□□□□ -0.44
SF1-206	ENST00000413725	CPTP	Q5TA50	214 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	TMEM198	Q66K66	360 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	CPZ	Q66K79	652 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	ANKRD26P1	Q6NSI1	321 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	C19orf48	Q6RUI8	117 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	KBTBD2	Q8IY47	623 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	KRTCAP2	Q8N6L1	136 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	NATD1	Q8N6N6	113 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	MORN4	Q8NDC4	146 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	B3GNT7	Q8NFL0	401 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	OR7A2P	Q8NGA2	310 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	ZFP28	Q8NHY6	868 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	M1AP	Q8TC57	530 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	PPWD1	Q96BP3	646 aa	Known RBP	12.29	□□□□□ -0.44
SF1-206	ENST00000413725	MARK4	Q96L34	752 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	IMMP1L	Q96LU5	166 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	ZNF681	Q96N22	645 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	COPS7A	Q9UBW8	275 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725	G3BP2	Q9UN86	482 aa	Known RBP	12.29	□□□□□ -0.44
SF1-206	ENST00000413725	GPR45	Q9Y5Y3	372 aa		12.29	□□□□□ -0.44
SF1-206	ENST00000413725		A0A1W2PS29	197 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	MYO1G	B0I1T2	1018 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	SERPINA7	P05543	415 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	ITGA3	P26006	1051 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	NCBP2	P52298	156 aa	Known RBP eCLIP	12.28	□□□□□ -0.44
SF1-206	ENST00000413725	SEC24C	P53992	1094 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	SRSF11	Q05519	484 aa	Known RBP	12.28	□□□□□ -0.44
SF1-206	ENST00000413725	CEBPE	Q15744	281 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	COL28A1	Q2UY09	1125 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	ZNF750	Q32MQ0	723 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	CGB2	Q6NT52	195 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	FAM180B	Q6P0A1	224 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	CPLX4	Q7Z7G2	160 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	GALNT12	Q8IXK2	581 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	RIMKLA	Q8IXN7	391 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	CCDC116	Q8IYX3	515 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	MIER2	Q8N344	545 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	PTPMT1	Q8WUK0	201 aa	Predicted RBP	12.28	□□□□□ -0.44
SF1-206	ENST00000413725	ZBED6CL	Q96FA7	236 aa	Predicted RBP	12.28	□□□□□ -0.44
SF1-206	ENST00000413725	VMP1	Q96GC9	406 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	CRELD1	Q96HD1	420 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	FBXL20	Q96IG2	436 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	CNPPD1	Q9BV87	410 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	OR8D2	Q9GZM6	311 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	FAM107B	Q9H098	131 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	CXorf21	Q9HAI6	301 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	KCNK13	Q9HB14	408 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	MMP25	Q9NPA2	562 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	SDR39U1	Q9NRG7	319 aa	Predicted RBP	12.28	□□□□□ -0.44
SF1-206	ENST00000413725	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	12.28	□□□□□ -0.44	8e-7	■■□□□ 12.2
SF1-206	ENST00000413725	ZIM2	Q9NZV7	527 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	PPIE	Q9UNP9	301 aa	Known RBP	12.28	□□□□□ -0.44
SF1-206	ENST00000413725	EML6	Q6ZMW3	1958 aa		12.28	□□□□□ -0.44
SF1-206	ENST00000413725	ANKRD28	O15084	1053 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	SLITRK5	O94991	958 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	NCF2	P19878	526 aa	Predicted RBP	12.27	□□□□□ -0.45
SF1-206	ENST00000413725	ATP4B	P51164	291 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	CLCN2	P51788	898 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	NME5	P56597	212 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	UFM1	P61960	85 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	RHD	Q02161	417 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	SQLE	Q14534	574 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	ZNF267	Q14586	743 aa	Predicted RBP	12.27	□□□□□ -0.45
SF1-206	ENST00000413725	TBR1	Q16650	682 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	PGS1	Q32NB8	556 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	ZNF385B	Q569K4	471 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	METTL21C	Q5VZV1	264 aa		12.27	□□□□□ -0.45
SF1-206	ENST00000413725	JMJD6	Q6NYC1	403 aa	Predicted RBP	12.27	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms