RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 KIRREL3Q8IZU9 778 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 ZNF321PQ8N8H1 164 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 CATSPER1Q8NEC5 780 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.2■□□□□ 0.82
CLN3-207ENST00000395653 KLHL29Q96CT2 875 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 FCRL1Q96LA6 429 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 ATP6V1G3Q96LB4 118 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 SH3GL2Q99962 352 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 MYNNQ9NPC7 610 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 EHD3Q9NZN3 535 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.2■□□□□ 0.82
CLN3-207ENST00000395653 RAP2CQ9Y3L5 183 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 PCDHGA10Q9Y5H3 936 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 A0A1W2PS29 197 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 LSM1O15116 133 aaKnown RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 F10P00742 488 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 SLC1A6P48664 564 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 STX3Q13277 289 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 TUBA3CQ13748 450 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 XKR7Q5GH72 579 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 TUBA3EQ6PEY2 450 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 MGARPQ8TDB4 240 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 UTP23Q9BRU9 249 aaKnown RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.19■□□□□ 0.82
CLN3-207ENST00000395653 CXorf21Q9HAI6 301 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 PFDN4Q9NQP4 134 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.19■□□□□ 0.82
CLN3-207ENST00000395653 UTS2RQ9UKP6 389 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 TMED5Q9Y3A6 229 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 ZNF780BQ9Y6R6 833 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 CNTRLQ7Z7A1 2325 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 FCHO1O14526 889 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 PRKNO60260 465 aaPredicted RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 ERAL1O75616 437 aaKnown RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 ATP1B1P05026 303 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 CSNK2A2P19784 350 aaPredicted RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 TRHRP34981 398 aaPredicted RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 MLLT10P55197 1068 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 ERVK-8P63133 956 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 ZNF267Q14586 743 aaPredicted RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 IKBIPQ70UQ0 350 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 GALNT12Q8IXK2 581 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 SAMD14Q8IZD0 417 aaPredicted RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 ZNF781Q8N8C0 355 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 THAP3Q8WTV1 239 aaPredicted RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 SORT1Q99523 831 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 CNPPD1Q9BV87 410 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 C20orf27Q9GZN8 174 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 ZNF395Q9H8N7 513 aaPredicted RBP20.19■□□□□ 0.82
CLN3-207ENST00000395653 HAO1Q9UJM8 370 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 ERVK-19Q9WJR5 959 aa20.19■□□□□ 0.82
CLN3-207ENST00000395653 TMEM200CA6NKL6 621 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 HRKO00198 91 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 DDCP20711 480 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 RPL38P63173 70 aaKnown RBP20.18■□□□□ 0.82
CLN3-207ENST00000395653 RNF4P78317 190 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 BST1Q10588 318 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 ZNF750Q32MQ0 723 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 RFTN2Q52LD8 501 aaPredicted RBP20.18■□□□□ 0.82
CLN3-207ENST00000395653 FAM71E1Q6IPT2 247 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 RPUSD3Q6P087 351 aaKnown RBP20.18■□□□□ 0.82
CLN3-207ENST00000395653 GOLGA6L1Q8N7Z2 621 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 OR5L2Q8NGL0 311 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 SUN3Q8TAQ9 357 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 RAB3IL1Q8TBN0 382 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 CNRIP1Q96F85 164 aaPredicted RBP20.18■□□□□ 0.82
CLN3-207ENST00000395653 PPP3R2Q96LZ3 170 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 ZNF681Q96N22 645 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 TRIM45Q9H8W5 580 aaPredicted RBP20.18■□□□□ 0.82
CLN3-207ENST00000395653 MYOTQ9UBF9 498 aa20.18■□□□□ 0.82
CLN3-207ENST00000395653 SKAP2O75563 359 aaPredicted RBP20.17■□□□□ 0.82
CLN3-207ENST00000395653 ITGA10O75578 1167 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 NT5EP21589 574 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 FEN1P39748 380 aaKnown RBP20.17■□□□□ 0.82
CLN3-207ENST00000395653 CD96P40200 585 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 C2orf80Q0P641 193 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 INPP5JQ15735 1006 aaPredicted RBP20.17■□□□□ 0.82
CLN3-207ENST00000395653 GALNTL6Q49A17 601 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 TTMPQ5BVD1 217 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 C6orf163Q5TEZ5 329 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 TRIM42Q8IWZ5 723 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 LRRC25Q8N386 305 aaPredicted RBP20.17■□□□□ 0.82
CLN3-207ENST00000395653 MDS2Q8NDY4 140 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 CDC26Q8NHZ8 85 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 NUBPLQ8TB37 319 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 CPT1CQ8TCG5 803 aa20.17■□□□□ 0.82
CLN3-207ENST00000395653 YARS2Q9Y2Z4 477 aaKnown RBP20.17■□□□□ 0.82
CLN3-207ENST00000395653 OR6C76A6NM76 312 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 PRAMEF2O60811 474 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 CYB561P49447 251 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 RPL14P50914 215 aaKnown RBP20.16■□□□□ 0.82
CLN3-207ENST00000395653 HK2P52789 917 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 OC90Q02509 493 aaPredicted RBP20.16■□□□□ 0.82
CLN3-207ENST00000395653 FUT7Q11130 342 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 OR1C1Q15619 314 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 CEBPEQ15744 281 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 ATP6AP1LQ52LC2 224 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 RNF111Q6ZNA4 994 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 HORMAD2Q8N7B1 307 aa20.16■□□□□ 0.82
CLN3-207ENST00000395653 DOK4Q8TEW6 326 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms