RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CLEC3AO75596 197 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 STK17BO94768 372 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 PGM3O95394 542 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 CLPTM1O96005 669 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 ANXA4P09525 319 aaPredicted RBP9.63□□□□□ -0.87
VPS53-202ENST00000389040 LIPCP11150 499 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 ZNF23P17027 643 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 ASMTP46597 345 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 GCGRP47871 477 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 WNT3P56703 355 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 ARF3P61204 181 aaPredicted RBP9.63□□□□□ -0.87
VPS53-202ENST00000389040 RPS13P62277 151 aaKnown RBP9.63□□□□□ -0.87
VPS53-202ENST00000389040 RGS1Q08116 209 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 ABHD18Q0P651 414 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 SLBPQ14493 270 aaKnown RBP eCLIP9.63□□□□□ -0.87
VPS53-202ENST00000389040 ENPP6Q6UWR7 440 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 ZNF517Q6ZMY9 492 aaPredicted RBP9.63□□□□□ -0.87
VPS53-202ENST00000389040 ASPGQ86U10 573 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 DTX1Q86Y01 620 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 NLGN4XQ8N0W4 816 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 C10orf111Q8N326 155 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 CSNK1A1LQ8N752 337 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 FAM86B1Q8N7N1 296 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 KDF1Q8NAX2 398 aaPredicted RBP9.63□□□□□ -0.87
VPS53-202ENST00000389040 SRFBP1Q8NEF9 429 aaKnown RBP9.63□□□□□ -0.87
VPS53-202ENST00000389040 NLGN4YQ8NFZ3 816 aaPredicted RBP9.63□□□□□ -0.87
VPS53-202ENST00000389040 FBXO30Q8TB52 745 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 NT5CQ8TCD5 201 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 CHTF18Q8WVB6 975 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 PANX1Q96RD7 426 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 PNPLA3Q9NST1 481 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 PADI1Q9ULC6 663 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 MAPRE3Q9UPY8 281 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 KLHL20Q9Y2M5 609 aa9.63□□□□□ -0.87
VPS53-202ENST00000389040 CROCCQ5TZA2 2017 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 MYOCOSA0A1B0GUC4 107 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 HYKKA2RU49 373 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 ANKDD1BA6NHY2 528 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 FOXE1O00358 373 aaPredicted RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 PLOD2O00469 737 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 ZNF749O43361 778 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 SCN2BO60939 215 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 SH3BGRLO75368 114 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 CREG1O75629 220 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 PRSS23O95084 383 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 DLGAP3O95886 979 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 RECKO95980 971 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 PABPC4LP0CB38 370 aaKnown RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 AGXTP21549 392 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 TIA1P31483 386 aaKnown RBP eCLIP9.62□□□□□ -0.87
VPS53-202ENST00000389040 HPCAL1P37235 193 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 PHEXP78562 749 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 MERTKQ12866 999 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 APOFQ13790 326 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 CPTPQ5TA50 214 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 C6orf15Q6UXA7 325 aaPredicted RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 UNQ6494/PRO21346Q6UXR6 183 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 SERPINA11Q86U17 422 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 MARCH9Q86YJ5 346 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 POP5Q969H6 163 aaKnown RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 SLC47A1Q96FL8 570 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 CTRCQ99895 268 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 GPR87Q9BY21 358 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 NTN4Q9HB63 628 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 APMAPQ9HDC9 416 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 DCAF13Q9NV06 445 aaKnown RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 IRAK4Q9NWZ3 460 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 SMPD3Q9NY59 655 aaPredicted RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 GNG14A0A1W2PPG7 69 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 EVPLLA8MZ36 301 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 C21orf140B9A014 251 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 H0YIG0 161 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 MEN1O00255 615 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 UPK1AO00322 258 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 DSCR3O14972 297 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 RRP8O43159 456 aaKnown RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 PCDH7O60245 1069 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 LCMT2O60294 686 aaKnown RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 PRKD3O94806 890 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 H6PDO95479 791 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 LAMP1P11279 417 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 MYF6P23409 242 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 RORAP35398 523 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 BCL6P41182 706 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 RPL5P46777 297 aaKnown RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 VSX2P58304 361 aaPredicted RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 STXBP1P61764 594 aaKnown RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 TGM3Q08188 693 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 NKG7Q16617 165 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 HKDC1Q2TB90 917 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 SLC36A3Q495N2 470 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 TMEM35AQ53FP2 167 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 FRMPD2BQ6IN97 320 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 ANKRD26P1Q6NSI1 321 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 TMEM214Q6NUQ4 689 aaKnown RBP9.62□□□□□ -0.87
VPS53-202ENST00000389040 GALNT18Q6P9A2 607 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 ABHD13Q7L211 337 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 SATL1Q86VE3 508 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 FAM47BQ8NA70 645 aa9.62□□□□□ -0.87
VPS53-202ENST00000389040 MAGEE2Q8TD90 523 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms