RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FUZQ9BT04 418 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 NT5DC2Q9H857 520 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 ATG4BQ9Y4P1 393 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 KCNE3Q9Y6H6 103 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 DNMT3AQ9Y6K1 912 aaPredicted RBP12.66□□□□□ -0.38
CCDC3-202ENST00000378839 VCANP13611 3396 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 A0A1W2PR48 441 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 MRPS14O60783 128 aaKnown RBP12.66□□□□□ -0.38
CCDC3-202ENST00000378839 SOX14O95416 240 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 NTN1O95631 604 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 TP53P04637 393 aaPredicted RBP12.66□□□□□ -0.38
CCDC3-202ENST00000378839 ELAVL4P26378 380 aaKnown RBP12.66□□□□□ -0.38
CCDC3-202ENST00000378839 PKLRP30613 574 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 FRMPD2BQ6IN97 320 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 BCDIN3DQ7Z5W3 292 aaKnown RBP12.66□□□□□ -0.38
CCDC3-202ENST00000378839 OR6Q1Q8NGQ2 317 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 OR8K5Q8NH50 307 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 SUN3Q8TAQ9 357 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 SLC38A4Q969I6 547 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 OR5M11Q96RB7 305 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 OR51I1Q9H343 314 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 A8MVJ9 347 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 EFCAB9A8MZ26 197 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 M0R3G1 203 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 M0R3H8 397 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 OCM2P0CE71 109 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 OCMP0CE72 109 aaPredicted RBP12.65□□□□□ -0.38
CCDC3-202ENST00000378839 CXCR2P25025 360 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 GDI1P31150 447 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 KCNJ5P48544 419 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 TBCEQ15813 527 aaPredicted RBP12.65□□□□□ -0.38
CCDC3-202ENST00000378839 TIGD6Q17RP2 521 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 C18orf63Q68DL7 685 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 FCRL4Q96PJ5 515 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 C1QTNF2Q9BXJ5 285 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 PRDM7Q9NQW5 492 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 ACSL5Q9ULC5 683 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.65□□□□□ -0.38
CCDC3-202ENST00000378839 ASB4Q9Y574 426 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 A0A1W2PQU0 124 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 CLDN24A6NM45 220 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 CLDN25C9JDP6 229 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 MAN2B1O00754 1011 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 IFNA14P01570 189 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 C5AR1P21730 350 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 POU1F1P28069 291 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 HOXD12P35452 270 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 HSD17B2P37059 387 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 CTSKP43235 329 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 RAB28P51157 221 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 PIN1Q13526 163 aaPredicted RBP12.65□□□□□ -0.38
CCDC3-202ENST00000378839 SPDYE7PQ495Y7 208 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 PAGE2Q7Z2X7 111 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 ZNF675Q8TD23 568 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 MS4A6EQ96DS6 147 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 CNRIP1Q96F85 164 aaPredicted RBP12.65□□□□□ -0.38
CCDC3-202ENST00000378839 COX4I2Q96KJ9 171 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 DHRS1Q96LJ7 313 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 COL21A1Q96P44 957 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 BCL7BQ9BQE9 202 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 PRR14Q9BWN1 585 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 OR51E2Q9H255 320 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 POLMQ9NP87 494 aaPredicted RBP12.65□□□□□ -0.38
CCDC3-202ENST00000378839 C11orf16Q9NQ32 467 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 SLC17A4Q9Y2C5 497 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 CA5BQ9Y2D0 317 aa12.65□□□□□ -0.38
CCDC3-202ENST00000378839 FAM32AQ9Y421 112 aaKnown RBP12.65□□□□□ -0.38
CCDC3-202ENST00000378839 RPN2P04844 631 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 C8orf89P0DMQ9 161 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 COL9A1P20849 921 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 CRISP1P54107 249 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 COLEC12Q5KU26 742 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 TPRG1LQ5T0D9 272 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 COL13A1Q5TAT6 717 aaPredicted RBP12.65□□□□□ -0.39
CCDC3-202ENST00000378839 DEF8Q6ZN54 512 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 DENND6BQ8NEG7 585 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 C16orf58Q96GQ5 468 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 GPA33Q99795 319 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 PCBD2Q9H0N5 130 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 QRSL1Q9H0R6 528 aaKnown RBP12.65□□□□□ -0.39
CCDC3-202ENST00000378839 SACM1LQ9NTJ5 587 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 A4GNTQ9UNA3 340 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 DUSP12Q9UNI6 340 aa12.65□□□□□ -0.39
CCDC3-202ENST00000378839 DSCR3O14972 297 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 TPST2O60704 377 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 CLEC3AO75596 197 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 CHRM4P08173 479 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF12P17014 697 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SSR2P43308 183 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 PPP2CBP62714 309 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 PPP2CAP67775 309 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 CCDC92Q53HC0 331 aaPredicted RBP12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SLC46A3Q7Z3Q1 461 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SZRD1Q7Z422 152 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 MEX3DQ86XN8 651 aaKnown RBP12.64□□□□□ -0.39
CCDC3-202ENST00000378839 SLC7A13Q8TCU3 470 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 XAGE5Q8WWM1 108 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 IL4I1Q96RQ9 567 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 FGF22Q9HCT0 170 aa12.64□□□□□ -0.39
CCDC3-202ENST00000378839 NEUROD4Q9HD90 331 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms