RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-206ENST00000376646 RNF103-CHMP3A0A140T963 221 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 CFAP73A6NFT4 308 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 KLLNB2CW77 178 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 K7EQD1 137 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 RNF103O00237 685 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 EEF2KO00418 725 aaKnown RBP1.71□□□□□ -2.14
VPS13A-206ENST00000376646 CCSO14618 274 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 STAM2O75886 525 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 SFTPBP07988 381 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 CCDC192P0DO97 292 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 ETS1P14921 441 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 GLRA1P23415 457 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 MAPK3P27361 379 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-206ENST00000376646 ID1P41134 155 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 FHITP49789 147 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 MFGE8Q08431 387 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-206ENST00000376646 RBBP4Q09028 425 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF177Q13360 481 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-206ENST00000376646 GCKRQ14397 625 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 CARTPTQ16568 116 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 HIGD2BQ4VC39 106 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 RTL6Q6ICC9 239 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 NEPROQ6NW34 567 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 LCLAT1Q6UWP7 414 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF730Q6ZMV8 503 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 ZFAND4Q86XD8 727 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 RELL2Q8NC24 303 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-206ENST00000376646 LEMD2Q8NC56 503 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 OR6M1Q8NGM8 313 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 TOMM40LQ969M1 308 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 MRPL24Q96A35 216 aaKnown RBP1.71□□□□□ -2.14
VPS13A-206ENST00000376646 GPR137Q96N19 417 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 JPH2Q9BR39 696 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-206ENST00000376646 TRPV6Q9H1D0 765 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 GANQ9H2C0 597 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 ADNPQ9H2P0 1102 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 GDF3Q9NR23 364 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 ACOXLQ9NUZ1 547 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 SPASTQ9UBP0 616 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 KCNN3Q9UGI6 736 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 NARFQ9UHQ1 456 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 WIPI2Q9Y4P8 454 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 IGHV3-20A0A0C4DH32 117 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 A0A0U1RRA0 63 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 IQCMA0A1B0GVH7 501 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 OR5H15A6NDH6 313 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 YJEFN3A6XGL0 299 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TFECO14948 347 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 INPP4BO15327 924 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TNFSF12O43508 249 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 PRPSAP2O60256 369 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 KIAA0513O60268 411 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 LRP3O75074 770 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 MTRF1O75570 445 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NXPH4O95158 308 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 MT-ATP6P00846 226 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 PGK2P07205 417 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CT45A8P0DMV1 189 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CT45A9P0DMV2 189 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 MARCKSP29966 332 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 HSPA1LP34931 641 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TNFRSF4P43489 277 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ATXN3P54252 364 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 PEX3P56589 373 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NLRP11P59045 1033 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 RPS27AP62979 156 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CCZ1BP86790 482 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CCZ1P86791 482 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 FCHO2Q0JRZ9 810 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 MEF2DQ14814 521 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 EXOSC7Q15024 291 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 KNOP1Q1ED39 458 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CCDC40Q4G0X9 1142 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 RFTN2Q52LD8 501 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 GPAT3Q53EU6 434 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 MPPE1Q53F39 396 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CT45A2Q5DJT8 189 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 DCAF12Q5T6F0 453 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NKAIN2Q5VXU1 208 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 C3P1Q6ZMU1 363 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 GET4Q7L5D6 327 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 BNIPLQ7Z465 357 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TAF8Q7Z7C8 310 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 OR4N5Q8IXE1 308 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ELMOD2Q8IZ81 293 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 PARP8Q8N3A8 854 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 KLHL30-AS1Q8NEE0 82 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 RAB39BQ96DA2 213 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 RPGRIP1Q96KN7 1286 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NSMCE2Q96MF7 247 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 LGMNQ99538 433 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 PINK1Q9BXM7 581 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 KRT23Q9C075 422 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 C1orf21Q9H246 121 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF107Q9UII5 783 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CCPG1Q9ULG6 757 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 DIMT1Q9UNQ2 313 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 PIN4Q9Y237 131 aaKnown RBP1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms