RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RHOP08100 348 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 JUNDP17535 347 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 ACRV1P26436 265 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 GSTM2P28161 218 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 CTBP2P56545 445 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 FXYD4P59646 89 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 FOXK1P85037 733 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 KCNAB2Q13303 367 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 DPY19L3Q6ZPD9 716 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 ERN2Q76MJ5 926 aaKnown RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 ZNF550Q7Z398 422 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 IRF7Q92985 503 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 SOX3P41225 446 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 STT3AP46977 705 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 TAS2R43P59537 309 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 ELOCQ15369 112 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 GPRIN1Q7Z2K8 1008 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 OR52P1PQ8NH57 321 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 GLYATL2Q8WU03 294 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 C7orf50Q9BRJ6 194 aaKnown RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 ACTL7AQ9Y615 435 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 HMX3A6NHT5 357 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 BCAS2O75934 225 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 FAM189BP81408 668 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 MLC1Q15049 377 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 SPRYD4Q8WW59 207 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 SLC2A4RGQ9NR83 387 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 GABRQQ9UN88 632 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 GCGRP47871 477 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 MRPL49Q13405 166 aaKnown RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 PLGLAQ15195 96 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 GPR139Q6DWJ6 353 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 NATD1Q8N6N6 113 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 OR4K13Q8NH42 304 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 ZDHHC12Q96GR4 267 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 OR2M4Q96R27 311 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 ZNF225Q9UK10 706 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 DNMT3AQ9Y6K1 912 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 B8ZZF3 427 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 OPN1LWP04000 364 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 FGF3P11487 239 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 LUMP51884 338 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-201ENST00000375820 TUBA1BP68363 451 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 TUBA4AP68366 448 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 ZNF805Q5CZA5 627 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 C6orf136Q5SQH8 315 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 HES5Q5TA89 166 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 SLC27A4Q6P1M0 643 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 LEG1Q6P5S2 330 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 TUBA1AQ71U36 451 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 PRR22Q8IZ63 422 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 PNPLA1Q8N8W4 532 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 OR4D6Q8NGJ1 314 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 NELL2Q99435 816 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 STRADBQ9C0K7 418 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 RXFP3Q9NSD7 469 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 EDARQ9UNE0 448 aa13.12□□□□□ -0.31
COL4A1-201ENST00000375820 GGT3PA6NGU5 568 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 C12orf71A8MTZ7 269 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 PCDH17O14917 1159 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SLC19A2O60779 497 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 LATS1O95835 1130 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 IFNA5P01569 189 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SHMT2P34897 504 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 PTGER1P34995 402 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SMAD2Q15796 467 aaKnown RBP13.11□□□□□ -0.31
COL4A1-201ENST00000375820 PSAPL1Q6NUJ1 521 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 LINC00471Q8N535 108 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 DCAF4L2Q8NA75 395 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 RCBTB1Q8NDN9 531 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 NTPCRQ9BSD7 190 aaKnown RBP13.11□□□□□ -0.31
COL4A1-201ENST00000375820 DPH7Q9BTV6 452 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SYNPO2LQ9H987 977 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 STARD5Q9NSY2 213 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 MEIS3P1A6NDR6 274 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 FRKP42685 505 aaPredicted RBP13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SIM1P81133 766 aaPredicted RBP13.11□□□□□ -0.31
COL4A1-201ENST00000375820 MVKQ03426 396 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SHISA6Q6ZSJ9 500 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 PACRGLQ8N7B6 248 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 KCNN1Q92952 543 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 RAD9AQ99638 391 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 CARD8Q9Y2G2 431 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 IRS2Q9Y4H2 1338 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 A0A1W2PQU0 124 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 KIAA0513O60268 411 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 NR2C1P13056 603 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 APOFQ13790 326 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 GRHL2Q6ISB3 625 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 CLECL1Q8IZS7 167 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 CREB3L4Q8TEY5 395 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 PIP5K1AQ99755 562 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 PAAF1Q9BRP4 392 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 DNTTIP1Q9H147 329 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 FAM118AQ9NWS6 357 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 UBQLN2Q9UHD9 624 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 UBE2J1Q9Y385 318 aaPredicted RBP13.11□□□□□ -0.31
COL4A1-201ENST00000375820 ANHXE9PGG2 379 aa13.11□□□□□ -0.31
COL4A1-201ENST00000375820 SHOXO15266 292 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms