RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 TCTN3Q6NUS6 607 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 C22orf39Q6P5X5 142 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 GDPGP1Q6ZNW5 385 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 Q6ZVU0 165 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 TRIM69Q86WT6 500 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 RDH10Q8IZV5 341 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 ZNF740Q8NDX6 193 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 OR56A3Q8NH54 315 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 RAB8BQ92930 207 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 TMEM159Q96B96 161 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 SLC6A16Q9GZN6 736 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 CXorf36Q9H7Y0 433 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 KCND3Q9UK17 655 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 GPSM3Q9Y4H4 160 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 KCNE2Q9Y6J6 123 aa13.41□□□□□ -0.26
CLCNKA-202ENST00000375692 OR6C70A6NIJ9 312 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ERVH48-1M5A8F1 160 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 RFXAPO00287 272 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 PRKYO43930 277 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 LRG1P02750 347 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 CATP04040 527 aaKnown RBP13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 YES1P07947 543 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 IL3P08700 152 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ETV5P41161 510 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ETV1P50549 477 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 CHRNEQ04844 493 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ILKQ13418 452 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 SAXO2Q658L1 398 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 DEF8Q6ZN54 512 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 VWA5B2Q8N398 1253 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 RASGEF1AQ8N9B8 481 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 OR4D11Q8NGI4 311 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 SLC38A5Q8WUX1 472 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 FRMD6Q96NE9 622 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 POLR2J3Q9H1A7 115 aaKnown RBP13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 MALT1Q9UDY8 824 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 RPL36Q9Y3U8 105 aaKnown RBP13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 PRUNE2Q8WUY3 3088 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 MYL12BO14950 172 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 CPNE3O75131 537 aaKnown RBP13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 LATS1O95835 1130 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ADAP00813 363 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 CKMP06732 381 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 NPPBP16860 134 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 POLR2EP19388 210 aaKnown RBP13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ELAVL4P26378 380 aaKnown RBP13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 HLA-FP30511 346 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 PCDH1Q08174 1060 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 PDE7AQ13946 482 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 E2F2Q14209 437 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ATAT1Q5SQI0 421 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 DCST1Q5T197 706 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 MEDAGQ5VYS4 303 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 FAM71E1Q6IPT2 247 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 REEP3Q6NUK4 255 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 XKRXQ6PP77 449 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 PRR23CQ6ZRP0 262 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ADGRD2Q7Z7M1 963 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 TMC8Q8IU68 726 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 HORMAD2Q8N7B1 307 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 PROKR2Q8NFJ6 384 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 FIBINQ8TAL6 211 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 ZNF480Q8WV37 535 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 APOBEC4Q8WW27 367 aaKnown RBP13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 CXorf40BQ96DE9 158 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 TCEAL4Q96EI5 215 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 NELL2Q99435 816 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 RNF121Q9H920 327 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 MAPRE3Q9UPY8 281 aa13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 SPIN1Q9Y657 262 aaPredicted RBP13.4□□□□□ -0.26
CLCNKA-202ENST00000375692 TNRC18O15417 2968 aaPredicted RBP13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 CARNS1A5YM72 827 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 APEX1P27695 318 aaKnown RBP13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 GSTM5P46439 218 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 TBPL1P62380 186 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 NTHL1P78549 312 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 GPLD1P80108 840 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 TARDBPQ13148 414 aaKnown RBP eCLIP13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 HEPACAMQ14CZ8 416 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 POM121L1PQ3SYA9 428 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 FAM209AQ5JX71 171 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 OR2G6Q5TZ20 316 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 C12orf73Q69YU5 71 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 MEX3DQ86XN8 651 aaKnown RBP13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 FAM181AQ8N9Y4 354 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 TP53I13Q8NBR0 393 aaPredicted RBP13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 JPH3Q8WXH2 748 aaPredicted RBP13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 TM9SF2Q99805 663 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 SLA2Q9H6Q3 261 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 MVB12BQ9H7P6 319 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 DMRT3Q9NQL9 472 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 NDRG2Q9UN36 371 aaKnown RBP13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 ANKDD1BA6NHY2 528 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 ZNF197O14709 1029 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 MLLT11Q13015 90 aaPredicted RBP13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 TMEM201Q5SNT2 666 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 MFSD4BQ5TF39 518 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 ERAP2Q6P179 960 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 SYCE2Q6PIF2 218 aa13.39□□□□□ -0.27
CLCNKA-202ENST00000375692 HMGN2P46Q86SG4 172 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms