RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 HTR3EA5X5Y0 456 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 WASH4PA8MWX3 477 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 FRS3O43559 492 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 TFPIP10646 304 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 CELP19835 753 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 IL12BP29460 328 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 ADH7P40394 386 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 PIK3CBP42338 1070 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 CEBPGP53567 150 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 SLAMF1Q13291 335 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 ZNF805Q5CZA5 627 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 COX20Q5RI15 118 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 GRHL2Q6ISB3 625 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.25□□□□□ -1.417e-7■■■■□ 25.1
SMC1A-202ENST00000375340 RNF111Q6ZNA4 994 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 C6orf120Q7Z4R8 191 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 TIGD4Q8IY51 512 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 SPERTQ8NA61 448 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 COQ8BQ96D53 544 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 EGLN2Q96KS0 407 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 TMEM30AQ9NV96 361 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 HSPE1-MOB4S4R3N1 261 aa6.25□□□□□ -1.41
SMC1A-202ENST00000375340 A0A1B0GTL3 188 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 PCDHGA12O60330 932 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 PPP3R1P63098 170 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SEMA3BQ13214 749 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 PTGES3Q15185 160 aaKnown RBP6.24□□□□□ -1.41
SMC1A-202ENST00000375340 KRT77Q7Z794 578 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 COMMD7Q86VX2 200 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ZNF461Q8TAF7 563 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 IRAK3Q9Y616 596 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SERPINA3P01011 423 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SOD2P04179 222 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 CCR7P32248 378 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 HMGCLP35914 325 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 MNDAP41218 407 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 MAP2K3P46734 347 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ALDH3B2P48448 385 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SPINT3P49223 89 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 HOXC5Q00444 222 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 PROX2Q3B8N5 592 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 VRK3Q8IV63 474 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ARMC10Q8N2F6 343 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 NEIL2Q969S2 332 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 MSANTD3Q96H12 275 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 CPPED1Q9BRF8 314 aaPredicted RBP6.24□□□□□ -1.41
SMC1A-202ENST00000375340 CENPOQ9BU64 300 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 FZD3Q9NPG1 666 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 DMRT3Q9NQL9 472 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SLCO3A1Q9UIG8 710 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SEC14L2O76054 403 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 CYBAP13498 195 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 LEXMQ3ZCV2 418 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 BCL2L15Q5TBC7 163 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 IL20RBQ6UXL0 311 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ENTHD1Q8IYW4 607 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 GATSQ8NAP1 163 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 DEDD2Q8WXF8 326 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 GLYATL1Q969I3 302 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 UBE2FQ969M7 185 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 NT5C3BQ969T7 300 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ADAD1Q96M93 576 aaKnown RBP6.24□□□□□ -1.41
SMC1A-202ENST00000375340 TTYH1Q9H313 450 aaPredicted RBP6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ANKMY1Q9P2S6 941 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ABCD2Q9UBJ2 740 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 NUFIP1Q9UHK0 495 aaKnown RBP6.24□□□□□ -1.41
SMC1A-202ENST00000375340 OR1A2Q9Y585 309 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 IFNA7P01567 189 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ERVK-21P61565 698 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 CAMK1Q14012 370 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 C2orf27AQ580R0 203 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 CNIH2Q6PI25 160 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 OR4N5Q8IXE1 308 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 DEFB119Q8N690 84 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 BBS10Q8TAM1 723 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 FUZQ9BT04 418 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 PPIL3Q9H2H8 161 aaKnown RBP6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SIAEQ9HAT2 523 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 TCRBV5S2A0A599 114 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 TRIM64CA6NLI5 447 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 BLOC1S5-TXNDC5H3BN57 136 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 EIF1AYO14602 144 aaKnown RBP6.24□□□□□ -1.41
SMC1A-202ENST00000375340 DNAJB5O75953 348 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SLC16A8O95907 504 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 CASP3P42574 277 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 ZNF81P51508 661 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 OR12D2P58182 307 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 PUM1Q14671 1186 aaKnown RBP eCLIP6.24□□□□□ -1.414e-7■■□□□ 12
SMC1A-202ENST00000375340 SPHARQ15513 63 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 MTFR2Q6P444 385 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 OR5M3Q8NGP4 307 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 WDR20Q8TBZ3 569 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 MYEOVQ96EZ4 313 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 HEBP2Q9Y5Z4 205 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 MAU2Q9Y6X3 613 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 FGF18O76093 207 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 HLA-DPB1P04440 258 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 FSHRP23945 695 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 TSPAN5P62079 268 aa6.24□□□□□ -1.41
SMC1A-202ENST00000375340 SELENOWP63302 87 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms