RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 PCDHA9Q9Y5H5 950 aa14.3□□□□□ -0.12
VAPA-201ENST00000340541 CCDC151A5D8V7 595 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 ITGA10O75578 1167 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 SLC35E2P0CK97 266 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 COX7A2P14406 83 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 ARRB2P32121 409 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 HLCSP50747 726 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 TRA2BP62995 288 aaKnown RBP14.29□□□□□ -0.12
VAPA-201ENST00000340541 SPRED3Q2MJR0 410 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 ZNF766Q5HY98 468 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 SLC48A1Q6P1K1 146 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 GALNT18Q6P9A2 607 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 HSDL2Q6YN16 418 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 TRIM46Q7Z4K8 759 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 EXOC3L1Q86VI1 746 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 OR6Y1Q8NGX8 325 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 OR8K3Q8NH51 312 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 DOK4Q8TEW6 326 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 RBM18Q96H35 190 aaKnown RBP14.29□□□□□ -0.12
VAPA-201ENST00000340541 FBXL20Q96IG2 436 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 PELOQ9BRX2 385 aaKnown RBP14.29□□□□□ -0.12
VAPA-201ENST00000340541 TRMOQ9BU70 441 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 LIN28AQ9H9Z2 209 aaKnown RBP14.29□□□□□ -0.12
VAPA-201ENST00000340541 SIRT5Q9NXA8 310 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 SENP1Q9P0U3 644 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 LRFN1Q9P244 771 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 MCM8Q9UJA3 840 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 OSGIN2Q9Y236 505 aa14.29□□□□□ -0.12
VAPA-201ENST00000340541 C1orf226A1L170 272 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 RGS16O15492 202 aaPredicted RBP14.28□□□□□ -0.12
VAPA-201ENST00000340541 ZNF354AO60765 605 aaPredicted RBP14.28□□□□□ -0.12
VAPA-201ENST00000340541 CLPSP04118 112 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 CHRNGP07510 517 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 UROSP10746 265 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 TIA1P31483 386 aaKnown RBP eCLIP14.28□□□□□ -0.123e-8■■■■□ 24
VAPA-201ENST00000340541 GALNSP34059 522 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 CYB561P49447 251 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 HK2P52789 917 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 RNF4P78317 190 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 OC90Q02509 493 aaPredicted RBP14.28□□□□□ -0.12
VAPA-201ENST00000340541 ZNF750Q32MQ0 723 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 SPIN4Q56A73 249 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 CEP85LQ5SZL2 805 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 CLEC6AQ6EIG7 209 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 SUN3Q8TAQ9 357 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 SREK1Q8WXA9 508 aaKnown RBP14.28□□□□□ -0.12
VAPA-201ENST00000340541 RELTQ969Z4 430 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 ZBTB9Q96C00 473 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 OLAHQ9NV23 265 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 MYOTQ9UBF9 498 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 HEY2Q9UBP5 337 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 ENTPD4Q9Y227 616 aa14.28□□□□□ -0.12
VAPA-201ENST00000340541 FCHO1O14526 889 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 HNRNPRO43390 633 aaKnown RBP14.27□□□□□ -0.13
VAPA-201ENST00000340541 PCDH7O60245 1069 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 NPHS1O60500 1241 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 GUCY1B2O75343 617 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 OR2J2O76002 312 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 BPGMP07738 259 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 SP1P08047 785 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 CPMP14384 443 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 PIK3R1P27986 724 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 SOX18P35713 384 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 XKP51811 444 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 TDGF1P3P51864 188 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 ERVK-8P63133 956 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 PMP22Q01453 160 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 DUSP2Q05923 314 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 ACSM2AQ08AH3 577 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 ARL13AQ5H913 290 aaPredicted RBP14.27□□□□□ -0.13
VAPA-201ENST00000340541 BEND6Q5SZJ8 279 aaPredicted RBP14.27□□□□□ -0.13
VAPA-201ENST00000340541 C1QL3Q5VWW1 255 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 KANK2Q63ZY3 851 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 ACSM2BQ68CK6 577 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 LRIG3Q6UXM1 1119 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 ZCCHC23Q6ZST2 131 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 C9orf40Q8IXQ3 194 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 OR4K14Q8NGD5 310 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 DNAJB8Q8NHS0 232 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 RIT1Q92963 219 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 PGM2Q96G03 612 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 CNPPD1Q9BV87 410 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 TUBB1Q9H4B7 451 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 CXorf21Q9HAI6 301 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 SSU72Q9NP77 194 aaKnown RBP14.27□□□□□ -0.13
VAPA-201ENST00000340541 KLHL1Q9NR64 748 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 ERVK-19Q9WJR5 959 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 YARS2Q9Y2Z4 477 aaKnown RBP14.27□□□□□ -0.13
VAPA-201ENST00000340541 PTGDR2Q9Y5Y4 395 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 DIDO1Q9BTC0 2240 aaKnown RBP14.27□□□□□ -0.13
VAPA-201ENST00000340541 ZGRF1Q86YA3 2104 aa14.27□□□□□ -0.13
VAPA-201ENST00000340541 CROCCQ5TZA2 2017 aa14.26□□□□□ -0.13
VAPA-201ENST00000340541 NPIPB8E9PQR5 432 aa14.26□□□□□ -0.13
VAPA-201ENST00000340541 WWP2O00308 870 aa14.26□□□□□ -0.13
VAPA-201ENST00000340541 AZIN1O14977 448 aa14.26□□□□□ -0.13
VAPA-201ENST00000340541 NME2P1O60361 137 aa14.26□□□□□ -0.13
VAPA-201ENST00000340541 OR10H2O60403 315 aa14.26□□□□□ -0.13
VAPA-201ENST00000340541 SLC25A12O75746 678 aa14.26□□□□□ -0.13
VAPA-201ENST00000340541 RSL1D1O76021 490 aaKnown RBP14.26□□□□□ -0.13
VAPA-201ENST00000340541 RASAL1O95294 804 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms