RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 IQCKQ8N0W5 287 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 TXNDC5Q8NBS9 432 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 OR10R2Q8NGX6 335 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 MALSU1Q96EH3 234 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 TRMT61AQ96FX7 289 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ZNF317Q96PQ6 595 aaPredicted RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 CXorf21Q9HAI6 301 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 TAS2R16Q9NYV7 291 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 PRODH2Q9UF12 536 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 APOBEC3BQ9UH17 382 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 MRPS7Q9Y2R9 242 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 A0A0G2JN53 185 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 A0A1W2PRB8 838 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 MEIS3P1A6NDR6 274 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 OR2AT4A6NND4 320 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 DCLK1O15075 740 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 YIF1AO95070 293 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 METTL15P1P0C7V9 234 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 CORO1AP31146 461 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RHDQ02161 417 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 KEAP1Q14145 624 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 TRIP6Q15654 476 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 MSMO1Q15800 293 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 TMEM35AQ53FP2 167 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 FAM205BPQ63HN1 556 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 LRRC70Q7Z2Q7 622 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 CEP97Q8IW35 865 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 DCUN1D3Q8IWE4 304 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 FBXO25Q8TCJ0 367 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 SH3RF2Q8TEC5 729 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 SMAP2Q8WU79 429 aaPredicted RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 LPGAT1Q92604 370 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 TMEM203Q969S6 136 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 MSI2Q96DH6 328 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 LMLNQ96KR4 655 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 KLHL15Q96M94 604 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ADAM19Q9H013 955 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 PRDM6Q9NQX0 595 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 MED17Q9NVC6 651 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 HECAQ9UBI9 543 aaPredicted RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 NAALADL1Q9UQQ1 740 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 FAM155AB1AL88 458 aaPredicted RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 H7C417 338 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 AZIN1O14977 448 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 UGDHO60701 494 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RAB40ALP0C0E4 278 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 BMP1P13497 986 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 PTPN6P29350 595 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 BMP8BP34820 402 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 MLLT10P55197 1068 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 SCAND1P57086 179 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ERVK-8P63133 956 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RUNX2Q13950 521 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 DOC2BQ14184 412 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 CSHL1Q14406 222 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 CLINT1Q14677 625 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 PTPRCAPQ14761 206 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 FAM174BQ3ZCQ3 159 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 SH3D19Q5HYK7 790 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ELP2Q6IA86 826 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ZNF517Q6ZMY9 492 aaPredicted RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 REC114Q7Z4M0 266 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 TPRA1Q86W33 373 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ECHDC2Q86YB7 292 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 HPS6Q86YV9 775 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 FAM71AQ8IYT1 594 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 TCEANCQ8N8B7 351 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 OR56A1Q8NGH5 318 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 GPBAR1Q8TDU6 330 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ADAMTS15Q8TE58 950 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RAB40AQ8WXH6 277 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 DIRAS2Q96HU8 199 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 CDK15Q96Q40 435 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 NTPCRQ9BSD7 190 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 LMF2Q9BU23 707 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 SLC25A31Q9H0C2 315 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RHBGQ9H310 441 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 EBF3Q9H4W6 596 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 IL26Q9NPH9 171 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 FAM205CA6NFA0 338 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 HHLA1C9JL84 531 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 E5RGE8 158 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 LRRN3E7EW58 273 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 KIAA0355O15063 1070 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ZNF780AO75290 641 aaPredicted RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RAD51DO75771 328 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 SLC1A3P43003 542 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RAB9AP51151 201 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RIDAP52758 137 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ADPRHP54922 357 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 HBG1P69891 147 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 HBG2P69892 147 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 RAPSNQ13702 412 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 GRK1Q15835 563 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 LRRC26Q2I0M4 334 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 AKR1C8PQ5T2L2 129 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 SYT6Q5T7P8 510 aaPredicted RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 ANKRD54Q6NXT1 300 aa3.15□□□□□ -1.9
CSMD3-202ENST00000339701 MTDHQ86UE4 582 aaKnown RBP3.15□□□□□ -1.9
CSMD3-202ENST00000339701 SERPINA12Q8IW75 414 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms