RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 AGAP4Q96P64 663 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF16P17020 682 aaPredicted RBP13.71□□□□□ -0.22
COL7A1-201ENST00000328333 THBS2P35442 1172 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 GHRHRQ02643 423 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 KCNS2Q9ULS6 477 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 A0A1W2PQL4 384 aaPredicted RBP13.71□□□□□ -0.22
COL7A1-201ENST00000328333 GOSR2O14653 212 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 KCNC1P48547 511 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 PSMD8P48556 350 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 ELP4Q96EB1 424 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 BMFQ96LC9 184 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.71□□□□□ -0.22
COL7A1-201ENST00000328333 PLIN4Q96Q06 1357 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 BHLHE40O14503 412 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 FAM163BP0C2L3 166 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 SPATA31D3P0C874 917 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 DGKQP52824 942 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 CXCR4P61073 352 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 MFSD13AQ14CX5 517 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 SLC18B1Q6NT16 456 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 SPATA31D4Q6ZUB0 917 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 NRROSQ86YC3 692 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 CFAP52Q8N1V2 620 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 SLC25A31Q9H0C2 315 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 CENPMQ9NSP4 180 aa13.71□□□□□ -0.22
COL7A1-201ENST00000328333 CHD3Q12873 2000 aaKnown RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 IQCF5A8MTL0 148 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 RPL35P42766 123 aaKnown RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 IRF4Q15306 451 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 DPYSL5Q9BPU6 564 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 POLE4Q9NR33 117 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 MSRAQ9UJ68 235 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 CHRM5P08912 532 aaPredicted RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 KLRK1P26718 216 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF84P51523 738 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 GALNT1Q10472 559 aaPredicted RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 TMEM220Q6QAJ8 160 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 JOSD2Q8TAC2 188 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 SLC25A36Q96CQ1 311 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 EVA1AQ9H8M9 152 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 ERVK13-1Q9NX77 482 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 PCCBP05166 539 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 SELPLGQ14242 412 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 ITPRIPL2Q3MIP1 535 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 BLOC1S3Q6QNY0 202 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 BBS1Q8NFJ9 593 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 TSPAN10Q9H1Z9 355 aaPredicted RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 PPP4R1LQ9P1A2 415 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 G6PDP11413 515 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 BMXP51813 675 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 NKX3-2P78367 333 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 FNDC9Q8TBE3 224 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 TSGA13Q96PP4 275 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 GAL3ST1Q99999 423 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 ADAM18Q9Y3Q7 739 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 TCEA1P23193 301 aaKnown RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 BEND4Q6ZU67 534 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 SGPP2Q8IWX5 399 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 ERI3O43414 337 aaKnown RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 SLC22A5O76082 557 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 SERPINF1P36955 418 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 CHST9Q7L1S5 443 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 IFNL1Q8IU54 200 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 CDCA5Q96FF9 252 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 CD244Q9BZW8 370 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 FAM212BQ9NTI7 297 aaPredicted RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 DDTLA6NHG4 134 aaPredicted RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 CLDN5O00501 218 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 CASC3O15234 703 aaKnown RBP13.7□□□□□ -0.22
COL7A1-201ENST00000328333 SLC16A5O15375 505 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 S100A8P05109 93 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 TMIGD1Q6UXZ0 262 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 ABHD11Q8NFV4 315 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 AKT1S1Q96B36 256 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 ELMOD3Q96FG2 381 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 KLRF1Q9NZS2 232 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 COQ4Q9Y3A0 265 aa13.7□□□□□ -0.22
COL7A1-201ENST00000328333 KRBA1A5PL33 1030 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 MITFO75030 526 aaPredicted RBP13.69□□□□□ -0.22
COL7A1-201ENST00000328333 MALLQ13021 153 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ELOAQ14241 798 aaKnown RBP13.69□□□□□ -0.22
COL7A1-201ENST00000328333 SLC39A4Q6P5W5 647 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 OR51G2Q8NGK0 314 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF587Q96SQ5 575 aaPredicted RBP13.69□□□□□ -0.22
COL7A1-201ENST00000328333 OR2S2Q9NQN1 319 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 FKBPLQ9UIM3 349 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 SLC6A5Q9Y345 797 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 NUDT1P36639 197 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 WNT4P56705 351 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 TAS2R30P59541 319 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 PAQR3Q6TCH7 311 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 SLC24A5Q71RS6 500 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 TICAM1Q8IUC6 712 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ZNF619Q8N2I2 560 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 SNX27Q96L92 541 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 MYOCQ99972 504 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ADAP2Q9NPF8 381 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 KCNIP1Q9NZI2 227 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 ACSL6Q9UKU0 697 aa13.69□□□□□ -0.22
COL7A1-201ENST00000328333 BCL9LQ86UU0 1499 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms