RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 FAM78AQ5JUQ0 283 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 ETFBKMTQ8IXQ9 262 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 MINDY2Q8NBR6 621 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 ZBED6CLQ96FA7 236 aaPredicted RBP16.5■□□□□ 0.23
COL9A1-201ENST00000320755 C12orf66Q96MD2 445 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 CRISPLD2Q9H0B8 497 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 QRSL1Q9H0R6 528 aaKnown RBP16.5■□□□□ 0.23
COL9A1-201ENST00000320755 C11orf49Q9H6J7 331 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 IL23AQ9NPF7 189 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 KCNK6Q9Y257 313 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 SLC27A6Q9Y2P4 619 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 PRAMEF27A3QJZ7 478 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 CCRL2O00421 344 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 TLX2O43763 284 aaPredicted RBP16.5■□□□□ 0.23
COL9A1-201ENST00000320755 MED26O95402 600 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 PAK4O96013 591 aaPredicted RBP16.5■□□□□ 0.23
COL9A1-201ENST00000320755 HOXB3P14651 431 aaPredicted RBP16.5■□□□□ 0.23
COL9A1-201ENST00000320755 GJA8P48165 433 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 TGM4P49221 684 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 CDK3Q00526 305 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 MADCAM1Q13477 382 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 WSCD2Q2TBF2 565 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 SPANXN2Q5MJ10 180 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 ZNF367Q7RTV3 350 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 NUDT13Q86X67 352 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 LINC01555Q8NAE3 123 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 DPH7Q9BTV6 452 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 ANKRA2Q9H9E1 313 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 REV1Q9UBZ9 1251 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 ENOPH1Q9UHY7 261 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 KLHL20Q9Y2M5 609 aa16.5■□□□□ 0.23
COL9A1-201ENST00000320755 HOXC11O43248 304 aaPredicted RBP16.49■□□□□ 0.23
COL9A1-201ENST00000320755 CXCR2P25025 360 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 SOX6P35712 828 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 BUD31P41223 144 aaPredicted RBP16.49■□□□□ 0.23
COL9A1-201ENST00000320755 MXD1Q05195 221 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 SFSWAPQ12872 951 aaKnown RBP16.49■□□□□ 0.23
COL9A1-201ENST00000320755 KRT33BQ14525 404 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 ZNF765Q7L2R6 523 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 RGMAQ96B86 450 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 TEFMQ96QE5 360 aaKnown RBP16.49■□□□□ 0.23
COL9A1-201ENST00000320755 ZNF607Q96SK3 696 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 KLHL31Q9H511 634 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 MBNL1Q9NR56 388 aaKnown RBP16.49■□□□□ 0.23
COL9A1-201ENST00000320755 GPR19Q15760 415 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 NDUFAF5Q5TEU4 345 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 SPATC1Q76KD6 591 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 APOBEC4Q8WW27 367 aaKnown RBP16.49■□□□□ 0.23
COL9A1-201ENST00000320755 JPH3Q8WXH2 748 aaPredicted RBP16.49■□□□□ 0.23
COL9A1-201ENST00000320755 TMEM203Q969S6 136 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 CDCA4Q9BXL8 241 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 NEUROD4Q9HD90 331 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 A4GALTQ9NPC4 353 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 PLEKHM1Q9Y4G2 1056 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 UGT2B17O75795 530 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 ADAP00813 363 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 NCBP2P52298 156 aaKnown RBP eCLIP16.49■□□□□ 0.23
COL9A1-201ENST00000320755 FAM46CQ5VWP2 391 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 UBE3DQ7Z6J8 389 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 BBS4Q96RK4 519 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 GLIPR2Q9H4G4 154 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 ANKHQ9HCJ1 492 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 KCND3Q9UK17 655 aa16.49■□□□□ 0.23
COL9A1-201ENST00000320755 F5P12259 2224 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 SH3D21A4FU49 640 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 TAF4O00268 1085 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 RFXAPO00287 272 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 SNPHO15079 494 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 MPZL2O60487 215 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 KCNJ5P48544 419 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 PCBP4P57723 403 aaKnown RBP16.48■□□□□ 0.23
COL9A1-201ENST00000320755 LASP1Q14847 261 aaKnown RBP16.48■□□□□ 0.23
COL9A1-201ENST00000320755 METRNLQ641Q3 311 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 PGBD2Q6P3X8 592 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 ATCAYQ86WG3 371 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 OR8H2Q8N162 312 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 SLC35G5Q96KT7 338 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 ZNF354BQ96LW1 612 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 TRMT61BQ9BVS5 477 aaKnown RBP16.48■□□□□ 0.23
COL9A1-201ENST00000320755 FNDC11Q9BVV2 318 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 RHBGQ9H310 441 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 EQTNQ9NQ60 294 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 SNTG1Q9NSN8 517 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 EHD3Q9NZN3 535 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 PCDHGB6Q9Y5F9 930 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 KLK4Q9Y5K2 254 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 SCN3AQ9NY46 2000 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 PTPRSQ13332 1948 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 A0A1W2PS29 197 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 SMIM30A4D0T7 59 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 OR52A4PA6NMU1 304 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 KCNK2O95069 426 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 DESI1Q6ICB0 168 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 PODNL1Q6PEZ8 512 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 CCDC116Q8IYX3 515 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 C9orf43Q8TAL5 461 aaPredicted RBP16.48■□□□□ 0.23
COL9A1-201ENST00000320755 KLHL6Q8WZ60 621 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 OPALINQ96PE5 141 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 PSD2Q9BQI7 771 aa16.48■□□□□ 0.23
COL9A1-201ENST00000320755 ASPNQ9BXN1 380 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 226.7 ms