RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 CPPED1Q9BRF8 314 aaPredicted RBP12.4□□□□□ -0.42
CPNE1-201ENST00000317677 REXO4Q9GZR2 422 aaKnown RBP12.4□□□□□ -0.42
CPNE1-201ENST00000317677 CARS2Q9HA77 564 aaKnown RBP12.4□□□□□ -0.42
CPNE1-201ENST00000317677 SLC2A4RGQ9NR83 387 aa12.4□□□□□ -0.42
CPNE1-201ENST00000317677 TAS2R9Q9NYW1 312 aa12.4□□□□□ -0.42
CPNE1-201ENST00000317677 USP36Q9P275 1121 aaKnown RBP12.4□□□□□ -0.42
CPNE1-201ENST00000317677 DUSP12Q9UNI6 340 aa12.4□□□□□ -0.42
CPNE1-201ENST00000317677 TRAPPC4Q9Y296 219 aa12.4□□□□□ -0.42
CPNE1-201ENST00000317677 PCDHB14Q9Y5E9 798 aa12.4□□□□□ -0.42
CPNE1-201ENST00000317677 PCDHGB6Q9Y5F9 930 aa12.4□□□□□ -0.42
CPNE1-201ENST00000317677 PCDHGB2Q9Y5G2 931 aa12.4□□□□□ -0.42
CPNE1-201ENST00000317677 NUP214P35658 2090 aaPredicted RBP12.4□□□□□ -0.43
CPNE1-201ENST00000317677 IGKV1-8A0A0C4DH67 115 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 SAP18O00422 153 aaKnown RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 RPN2P04844 631 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 SRFP11831 508 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PRPS1L1P21108 318 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 AK4P27144 223 aaPredicted RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 CD6P30203 668 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TIA1P31483 386 aaKnown RBP eCLIP12.39□□□□□ -0.433e-7■■■■■ 41.5
CPNE1-201ENST00000317677 GZMMP51124 257 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 CXCR4P61073 352 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 CYP4F3Q08477 520 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 SLC14A1Q13336 389 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 GAS6Q14393 721 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 RPE65Q16518 533 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TBRG1Q3YBR2 411 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PXDC1Q5TGL8 231 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 ENPP7Q6UWV6 458 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PHACTR4Q8IZ21 702 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 DTWD1Q8N5C7 304 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 CCL4L1Q8NHW4 92 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.39□□□□□ -0.438e-8■■■■■ 32.7
CPNE1-201ENST00000317677 TSACCQ96A04 125 aaPredicted RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 SH3KBP1Q96B97 665 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TOE1Q96GM8 510 aaKnown RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 MBOAT4Q96T53 435 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PHOX2BQ99453 314 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TTYH2Q9BSA4 534 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 C6orf106Q9H6K1 298 aaPredicted RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 WASH6PQ9NQA3 447 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TBC1D29Q9UFV1 150 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 ICKQ9UPZ9 632 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 AP3M1Q9Y2T2 418 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 AUP1Q9Y679 476 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 A0A096LPI6 279 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 ARHGEF9O43307 516 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 OR7A10O76100 309 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 GBAP04062 536 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 IGHV4-34P06331 123 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 ANXA4P09525 319 aaPredicted RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 LAMP1P11279 417 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 HNRNPA2B1P22626 353 aaKnown RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PEBP1P30086 187 aaKnown RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 POU6F2P78424 691 aaPredicted RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PIGFQ07326 219 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TNK1Q13470 666 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 HKDC1Q2TB90 917 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 UAP1L1Q3KQV9 507 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 ZNF385BQ569K4 471 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 NXNL2Q5VZ03 156 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TMIGD1Q6UXZ0 262 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 SPATC1Q76KD6 591 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 HDDC2Q7Z4H3 204 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 C17orf64Q86WR6 236 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 RAB43Q86YS6 212 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 NLGN4XQ8N0W4 816 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 AMER2Q8N7J2 671 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TMEM145Q8NBT3 493 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 OR52E1Q8NGJ3 308 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 CDC26Q8NHZ8 85 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 SMPDL3AQ92484 453 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 BIRC7Q96CA5 298 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 REPS1Q96D71 796 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 OR2M4Q96R27 311 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 APOL4Q9BPW4 351 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 UQCC2Q9BRT2 126 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 SORBS1Q9BX66 1292 aaKnown RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PELI2Q9HAT8 420 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 TIGARQ9NQ88 270 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 SIRT5Q9NXA8 310 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 EHD3Q9NZN3 535 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PCDHGA10Q9Y5H3 936 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 PEX16Q9Y5Y5 336 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 KMT2EQ8IZD2 1858 aa12.39□□□□□ -0.43
CPNE1-201ENST00000317677 FEZF1A0PJY2 475 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 GABRR3A8MPY1 467 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 EFCAB9A8MZ26 197 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 FPGTO14772 594 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 SCAMP2O15127 329 aaKnown RBP12.38□□□□□ -0.43
CPNE1-201ENST00000317677 SLC16A6O15403 523 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 PRICKLE3O43900 615 aaPredicted RBP12.38□□□□□ -0.43
CPNE1-201ENST00000317677 PCDH7O60245 1069 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 PRMT3O60678 531 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 EPN2O95208 641 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 SEMA4FO95754 770 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 PDGFAP04085 211 aa12.38□□□□□ -0.43
CPNE1-201ENST00000317677 ALOX12P18054 663 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms