RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TSGA13Q96PP4 275 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 CARS2Q9HA77 564 aaKnown RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 MEAF6Q9HAF1 191 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 HHATLQ9HCP6 504 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PTPN6P29350 595 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ACVR1BP36896 505 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 TAS2R31P59538 309 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 POU6F2P78424 691 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 TMEM156Q8N614 296 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 SNAPC3Q92966 411 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF419Q96HQ0 510 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 MYRFLQ96LU7 910 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF578Q96N58 590 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 SAMD10Q9BYL1 202 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 HEBP1Q9NRV9 189 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 A0A1W2PQL4 384 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF701M0R085 212 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 CLCNKAP51800 687 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PIGFQ07326 219 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PMS2P3Q13401 168 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PEA15Q15121 130 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ASRGL1Q7L266 308 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 TSPYL5Q86VY4 417 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 RASGRP3Q8IV61 690 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 TRAM1L1Q8N609 369 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 CPT1CQ8TCG5 803 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 DLGAP4Q9Y2H0 992 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 MYBPHLA2RUH7 354 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 LYRM1O43325 122 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 GNB3P16520 340 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PTPN2P17706 415 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 AQP2P41181 271 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF33AQ06730 810 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ARSIQ5FYB1 569 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 CIDECQ96AQ7 238 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 XPNPEP1Q9NQW7 623 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 SACM1LQ9NTJ5 587 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 LMTK2Q8IWU2 1503 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PIK3C2BO00750 1634 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ANKRD66B4E2M5 251 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 FECHP22830 423 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 RRAS2P62070 204 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 PSPHP78330 225 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 UBE2UQ5VVX9 321 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 SVBPQ8N300 66 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ARL14EPQ8N8R7 260 aaPredicted RBP13.31□□□□□ -0.28
CSPG4-201ENST00000308508 OR2AP1Q8NGE2 309 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 ELMOD3Q96FG2 381 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 HS6ST2Q96MM7 605 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 TMEM59LQ9UK28 342 aa13.31□□□□□ -0.28
CSPG4-201ENST00000308508 BCAS1O75363 584 aaPredicted RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 STSP08842 583 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 THBS2P35442 1172 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 KCNJ5P48544 419 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 AKR1C2P52895 323 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 GHRHRQ02643 423 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 PPIGQ13427 754 aaKnown RBP eCLIP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 AMZ1Q400G9 498 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 KCTD20Q7Z5Y7 419 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SYT14Q8NB59 555 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 MYLIPQ8WY64 445 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 LIPT1Q9Y234 373 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 MAFBQ9Y5Q3 323 aaPredicted RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 PYCR1P32322 319 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 STC1P52823 247 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 DNAJC5Q9H3Z4 198 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 NPIPA2E9PIF3 369 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 NPIPA3F8WFD2 350 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 UBFD1O14562 309 aaKnown RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SLC22A5O76082 557 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 PRKCAP17252 672 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 AK4P27144 223 aaPredicted RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 BDKRB1P46663 353 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 TMEM225Q6GV28 225 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SUMF2Q8NBJ7 301 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 OR5M3Q8NGP4 307 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 OR1J4Q8NGS1 313 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 MRI1Q9BV20 369 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF395Q9H8N7 513 aaPredicted RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 RLIMQ9NVW2 624 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 WNT7AO00755 349 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SGCEO43556 437 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 ATE1O95260 518 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 LMO2P25791 158 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 ZDHHC14Q8IZN3 488 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 LRR1Q96L50 414 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 PRMT8Q9NR22 394 aaPredicted RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 MROH2AA6NES4 1674 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 OR9A1PQ8NGU1 263 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 ABHD5Q8WTS1 349 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SPIN2AQ99865 258 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SPIN2BQ9BPZ2 258 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 OR51E2Q9H255 320 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 COQ3Q9NZJ6 369 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 MRPL15Q9P015 296 aaKnown RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 PADI3Q9ULW8 664 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 GPR25O00155 361 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 MRPS14O60783 128 aaKnown RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 GCGRP47871 477 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 GALEQ14376 348 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms