RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 OR51Q1Q8NH59 317 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 MMP8P22894 467 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 HNRNPDQ14103 355 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 STEAP4Q687X5 459 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 SMPDL3AQ92484 453 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 C17orf112F2Z3M2 114 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 F6UZH7 168 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 BCAS2O75934 225 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 TFP02787 698 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 FOXR2Q6PJQ5 311 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 KCTD20Q7Z5Y7 419 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 NPAS3Q8IXF0 933 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 DDIT4LQ96D03 193 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 ABCG5Q9H222 651 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 RRAGCQ9HB90 399 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 PDE4DIPQ5VU43 2346 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 NPIPA7E9PJI5 369 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 H7C1Q1 480 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 FAAHO00519 579 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 NPIPA8P0DM63 369 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 FUT10Q6P4F1 479 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 OR4K14Q8NGD5 310 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 ACDQ96AP0 544 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC2A4RGQ9NR83 387 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 ROBO2Q9HCK4 1378 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 UNC119BA6NIH7 251 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 GRXCR1A8MXD5 290 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 TIGD5Q53EQ6 642 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC2A12Q8TD20 617 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 DNAJC5BQ9UF47 199 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 ROBO3Q96MS0 1386 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 TULP4Q9NRJ4 1543 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 B4GALT4O60513 344 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 AMY2AP04746 511 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 MRPL3P09001 348 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 CCL23P55773 120 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 HIST2H3PS2Q5TEC6 136 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 PAPD5Q8NDF8 572 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 OR10T2Q8NGX3 314 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 CDK15Q96Q40 435 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 MARCKSL1P49006 195 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 CSNK2A1P68400 391 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC24A5Q71RS6 500 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 CSNK2A3Q8NEV1 391 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 FGGYQ96C11 551 aa13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF436Q9C0F3 470 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 LSM5Q9Y4Y9 91 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-201ENST00000263630 MEGF11A6BM72 1044 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC15A5A6NIM6 579 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 CCDC88AQ3V6T2 1871 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 OR51T1Q8NGJ9 327 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 A0A1W2PP18 115 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 CD300LBA8K4G0 201 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 B4GALT2O60909 372 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 MSMO1Q15800 293 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 DPY19L2P1Q6NXN4 242 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC7A13Q8TCU3 470 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 FAM221BA6H8Z2 402 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 TMEM150BA6NC51 233 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF891A8MT65 544 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 FMO6PO60774 539 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 MGST1P10620 155 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 CDKN2BP42772 138 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 CHRNA6Q15825 494 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 XYLT1Q86Y38 959 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 BBS10Q8TAM1 723 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 FNDC9Q8TBE3 224 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 TBC1D20Q96BZ9 403 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 KCNH6Q9H252 994 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 CBY1Q9Y3M2 126 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 ASB3Q9Y575 518 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 NKD2Q969F2 451 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC19A3Q9BZV2 496 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 AKTIPQ9H8T0 292 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 HES2Q9Y543 173 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 NPFFR2Q9Y5X5 522 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 DCNP07585 359 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 CHRM1P11229 460 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 RAB6AP20340 208 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 EPHA1P21709 976 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 FBXO48Q5FWF7 155 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 EGFL6Q8IUX8 553 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC5A11Q8WWX8 675 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 LURAP1Q96LR2 239 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 GPR160Q9UJ42 338 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 SPDEFO95238 335 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 ATP1B2P14415 290 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 SCAPQ12770 1279 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 HORMAD2Q8N7B1 307 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 VPS25Q9BRG1 176 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 ADRB2P07550 413 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 OR6T1Q8NGN1 323 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 LNX1Q8TBB1 728 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 ARNTL2Q8WYA1 636 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 FAM118AQ9NWS6 357 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 ASB4Q9Y574 426 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 ASTN1O14525 1302 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 NAP1L6A6NFF2 107 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 K7EQM0 130 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 CPNE6O95741 557 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms