RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CHAF1BQ13112 559 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 LRP8Q14114 963 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 TAZQ16635 292 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 GRHL2Q6ISB3 625 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 KCTD18Q6PI47 426 aaPredicted RBP10.28□□□□□ -0.76
CD44-201ENST00000263398 CEACAM19Q7Z692 300 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 CNTN4Q8IWV2 1026 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 PIAS4Q8N2W9 510 aaPredicted RBP10.28□□□□□ -0.76
CD44-201ENST00000263398 TMIEQ8NEW7 156 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 OR4K17Q8NGC6 315 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 RPLP0P6Q8NHW5 317 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 AKAP1Q92667 903 aaKnown RBP eCLIP10.28□□□□□ -0.76
CD44-201ENST00000263398 TFAP2CQ92754 450 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 BEX2Q9BXY8 128 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 RNF38Q9H0F5 515 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 ABCG5Q9H222 651 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 BEX1Q9HBH7 125 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 FKBP14Q9NWM8 211 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 CLDND1Q9NY35 253 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 VAPAQ9P0L0 249 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 FBXO9Q9UK97 447 aaPredicted RBP10.28□□□□□ -0.76
CD44-201ENST00000263398 NUMA1Q14980 2115 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 UNC119BA6NIH7 251 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 AK1P00568 194 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 PFKLP17858 780 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 ERP29P30040 261 aaKnown RBP10.28□□□□□ -0.76
CD44-201ENST00000263398 HOXC12P31275 282 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 CDKL1Q00532 357 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 E2F1Q01094 437 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 RAB33AQ14088 237 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 ODF4Q2M2E3 257 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 NCCRP1Q6ZVX7 275 aaPredicted RBP10.28□□□□□ -0.76
CD44-201ENST00000263398 PIANPQ8IYJ0 282 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 HS3ST5Q8IZT8 346 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 LRRC25Q8N386 305 aaPredicted RBP10.28□□□□□ -0.76
CD44-201ENST00000263398 MFSD2AQ8NA29 543 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 OR6N2Q8NGY6 317 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 SETD6Q8TBK2 473 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 TMIGD2Q96BF3 282 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 ECHDC3Q96DC8 303 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 SLC30A3Q99726 388 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 G6PC3Q9BUM1 346 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 GPR83Q9NYM4 423 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 MAFFQ9ULX9 164 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 ABCG2Q9UNQ0 655 aa10.28□□□□□ -0.76
CD44-201ENST00000263398 PLCH1Q4KWH8 1693 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 AXIN1O15169 862 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 RFPL2O75678 378 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 PIM1P11309 404 aaPredicted RBP10.27□□□□□ -0.76
CD44-201ENST00000263398 PDHA2P29803 388 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 ZNF81P51508 661 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 PRKCDQ05655 676 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 RIPPLY1Q0D2K3 151 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 ALG1LQ6GMV1 187 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 OR52E8Q6IFG1 317 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 LNX2Q8N448 690 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 TTC9BQ8N6N2 239 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 OR7G3Q8NG95 312 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 OR6N1Q8NGY5 312 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 ITPKCQ96DU7 683 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 WDR92Q96MX6 357 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 CCDC32Q9BV29 185 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 PRTFDC1Q9NRG1 225 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 KLRF1Q9NZS2 232 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 TMEM14AQ9Y6G1 99 aa10.27□□□□□ -0.76
CD44-201ENST00000263398 A0A1B0GVI7 797 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 TCRBV3S1A0A5B6 114 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 NOTOA8MTQ0 251 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 A8MV72 311 aaPredicted RBP10.27□□□□□ -0.77
CD44-201ENST00000263398 TTC34A8MYJ7 566 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 BOLA2-SMG1P6H3BVE0 249 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 SOX1O00570 391 aaPredicted RBP10.27□□□□□ -0.77
CD44-201ENST00000263398 RBBP9O75884 186 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 ANXA3P12429 323 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 CNR2P34972 360 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 MTNR1AP48039 350 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 OC90Q02509 493 aaPredicted RBP10.27□□□□□ -0.77
CD44-201ENST00000263398 CDK5R2Q13319 367 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.27□□□□□ -0.77
CD44-201ENST00000263398 GLT8D1Q68CQ7 371 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 MS4A15Q8N5U1 240 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 C16orf78Q8WTQ4 265 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 FCAMRQ8WWV6 532 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 SH3YL1Q96HL8 342 aaPredicted RBP10.27□□□□□ -0.77
CD44-201ENST00000263398 GTPBP2Q9BX10 602 aaKnown RBP10.27□□□□□ -0.77
CD44-201ENST00000263398 AGPAT4Q9NRZ5 378 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 SERTAD3Q9UJW9 196 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 SH2B3Q9UQQ2 575 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 MAB21L2Q9Y586 359 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 OR5K4A6NMS3 321 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 M0R233 179 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 C6P13671 934 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 S1PR1P21453 382 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 CD70P32970 193 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 PTGS2P35354 604 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 RGNQ15493 299 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 SGCBQ16585 318 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 KIAA0319Q5VV43 1072 aa10.27□□□□□ -0.77
CD44-201ENST00000263398 ZNF551Q7Z340 670 aaPredicted RBP10.27□□□□□ -0.77
CD44-201ENST00000263398 SLC15A4Q8N697 577 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms